CX297754

Overview
NameCX297754
Unique NameCX297754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.627e-40
Identity = 76/96 (79.17%), Postives = 83/96 (86.46%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GGFE IK+AI  L LRH  HI+AYGEGNERRLTGKHETA I TF WGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY+VT ++AETTILW+P
Sbjct:  312 GGFEEIKRAILNLSLRHDLHISAYGEGNERRLTGKHETASIGTFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTGLLAETTILWQP 407          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.627e-40
Identity = 77/96 (80.21%), Postives = 84/96 (87.50%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GGFEVIKKAI  L LRH  HI+AYGEGNERRLTG HETA I+ F WGVANRG SIRVGRDTE +GKGY EDRRPASNMDPYVVT+++AETTILW+P
Sbjct:  317 GGFEVIKKAILNLSLRHDLHISAYGEGNERRLTGLHETASIDNFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYVVTALLAETTILWEP 412          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.138e-39
Identity = 76/96 (79.17%), Postives = 83/96 (86.46%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 290
            GGF+VIKKAI  L LRH  HIAAYGEGNERRLTG HETA I+ F WGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY VT+++AETTILW+P
Sbjct:  323 GGFDVIKKAILNLSLRHDLHIAAYGEGNERRLTGLHETASISDFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYTVTALLAETTILWEP 418          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.536e-29
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 3
Query:    6 GFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 281
            G++VI++   KL  RH+ HIAAYGEGNERRLTGKHET+ ++ F WGVANRG SIRVGR    E  GY+EDRRPASN+D YVVT +I ETTIL
Sbjct:  290 GWKVIQEHCAKLEARHAVHIAAYGEGNERRLTGKHETSSMSDFSWGVANRGCSIRVGRMVPVEKSGYYEDRRPASNLDAYVVTRLIVETTIL 381          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_DUNSA (Glutamine synthetase (Fragment) OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.469e-29
Identity = 59/87 (67.82%), Postives = 70/87 (80.46%), Query Frame = 3
Query:   21 KKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 281
            + + +KLG RH  HIAAYGEGNERRLTGKHET+ +N F WGVANRG SIRVGR    E  GY+EDRRP+SN+DPYVVT ++ ETT+L
Sbjct:  148 RSSAKKLGKRHRWHIAAYGEGNERRLTGKHETSSMNDFSWGVANRGCSIRVGRMVPVEKCGYYEDRRPSSNLDPYVVTRLLVETTLL 234          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.836e-29
Identity = 64/95 (67.37%), Postives = 72/95 (75.79%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 287
            GG + I+ AIEKL  RH EHIA YGE N+ RLTG+HET  I+ F  GVANRGASIRV R    +G GY EDRRPASN+DPY VTS+IAETTIL K
Sbjct:  260 GGMKFIEDAIEKLAKRHDEHIAVYGEDNDLRLTGRHETGHISNFSSGVANRGASIRVPRHVASQGYGYLEDRRPASNIDPYRVTSIIAETTILDK 354          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.955e-29
Identity = 62/93 (66.67%), Postives = 71/93 (76.34%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 281
            GG +VI++AIEKL  RH EHIA YGE N+ RLTG+HET  I  F  GVANRGASIRV R    +G GY EDRRPASN+DPY VTS+I ETT+L
Sbjct:  260 GGMKVIEEAIEKLSKRHDEHIAVYGEDNDLRLTGRHETGHIGAFSSGVANRGASIRVPRHVAAQGYGYLEDRRPASNIDPYRVTSIIVETTLL 352          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 9.955e-29
Identity = 64/95 (67.37%), Postives = 70/95 (73.68%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 287
            GG + I+ AIEKL  RH EHIA YGE NE RLTG+HET  I TF  GVANRGASIRV R    +G GY EDRRPASN+DPY VT +I ETTIL K
Sbjct:  260 GGMKYIEAAIEKLAKRHDEHIAVYGEDNEMRLTGRHETGHIGTFSSGVANRGASIRVPRHVANKGYGYLEDRRPASNIDPYRVTGIIIETTILDK 354          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.698e-28
Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 272
            GG + I+ AIEKL  RH+EHI  YG  NE+RLTG+HETA ++TF  GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  264 GGMKYIEDAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMSTFSSGVANRGASIRIPRSVNKEGYGYFEDRRPASNIDPYLVTGIMCET 353          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.783e-28
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 272
            GG + I+  ++KL  RH EHIA YGEGNE RLTG+HET +I+ F +GVA+RG SIR+ R   K+GKGYFEDRRPASN DPY +T +IAET
Sbjct:  250 GGIKAIESYMKKLEARHVEHIAVYGEGNEERLTGRHETGNIDKFSYGVADRGGSIRIPRQVAKDGKGYFEDRRPASNADPYQITGIIAET 339          
The following BLAST results are available for this feature:
BLAST of CX297754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNAC_MAIZE5.627e-4079.17Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA2_ORYSJ5.627e-4080.21Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNA2_HORVU2.138e-3979.17Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA1_CHLRE1.536e-2967.39Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA_DUNSA4.469e-2967.82Glutamine synthetase (Fragment) OS=Dunaliella sali... [more]
GLNA_AGABI5.836e-2967.37Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_HEBCY9.955e-2966.67Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_AMAMU9.955e-2967.37Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_KLULA1.698e-2865.56Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA_EMENI3.783e-2863.33Glutamine synthetase OS=Emericella nidulans GN=gln... [more]

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Properties
Property NameValue
Genbank descriptionC06004H05SK RindPdig24 Citrus clementina cDNA clone C06004H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297754 ID=CX297754; Name=CX297754; organism=Citrus clementina; type=EST; length=563bp
AGGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGG
CACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCAC
TGGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCTA
ACCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAAG
GGTTACTTTGAGGACAGGAGACCTGCTTCTAACATGGATCCATATGTTGT
CACCTCCATGATTGCAGAAACCACTATTCTGTGGAAGCCATGAATGCTCC
TCTAGCAACCTTTGAAATATTTTGTTTGATCTGCTGGCTTTACTCAGGAT
TCACGAGTTCACGACAGAATTGTGTTCTGCTAAGGATGCTTTATTAGTAG
TAGTTCAGCTTTTGTCTTGTTTCAATCTCTGCCCCTGTATTTGCAACAGT
GGGTTCATTGCTTCCTGCTGTCCTATTGGGTTGAATAATGTAAACATTTA
ATTTAATAACATTATGGAAGGGTCAATTCCTTTTGTTCAAAAAAAAAAAA
AAAAAAAAAAAAA
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