CX297754

Overview
NameCX297754
Unique NameCX297754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.453e-28
Identity = 57/90 (63.33%), Postives = 71/90 (78.89%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 272
            GG + I+ AI+KL  RH EHIA YGEGN++RLTG+HET  I++F +GVANRGASIR+ R+   +G GYFEDRRPASN DPY +T +I ET
Sbjct:  266 GGMKYIEDAIKKLEARHKEHIAVYGEGNDKRLTGRHETGSIDSFTYGVANRGASIRIPRECGAKGYGYFEDRRPASNADPYQITGIIMET 355          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.427e-28
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 272
            GG + I+ AIEKL  RH EHIA YGE N+ RLTG+HET  I +F  GVANRG SIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  253 GGMKHIEAAIEKLAARHKEHIAVYGEDNDMRLTGRHETGSIGSFSSGVANRGCSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMTET 342          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.427e-28
Identity = 58/90 (64.44%), Postives = 71/90 (78.89%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 272
            GG + I++AIEKL  RH+EHI  YG  NE+RLTG+HETA + +F  GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  262 GGMKYIEQAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMTSFSSGVANRGASIRIPRPVAKEGFGYFEDRRPASNIDPYLVTGIMCET 351          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.427e-28
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 272
            GG   I++AI+KL  RH EHI  YG  NE RLTG+HETA + TF  GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT +I ET
Sbjct:  261 GGMRYIEEAIDKLSKRHKEHIKLYGSDNELRLTGRHETASMATFSSGVANRGASIRIPRSVSKEGFGYFEDRRPASNIDPYLVTGIICET 350          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_SUIBO (Glutamine synthetase OS=Suillus bovinus GN=GLNA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.101e-27
Identity = 61/95 (64.21%), Postives = 70/95 (73.68%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 287
            GG + I +AIEKL  RH+EHIA YGE N+ RLTG+HET  I  F  GVANRGASIRV R    +G GY EDRRPASN+DPY VT +I ETT+L K
Sbjct:  260 GGMKYIDEAIEKLSKRHAEHIAVYGEDNDLRLTGRHETGHIGDFSSGVANRGASIRVPRHVAAQGYGYLEDRRPASNIDPYRVTGIIVETTVLDK 354          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.182e-27
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 272
            GG + I++AIEKL  RH+EHI  YG  N+ RLTG+HETA +  F  GVANRG+SIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  262 GGMKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCET 351          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.462e-27
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 272
            GG + I+ AI+KL  RH EHIA YGEGNE+RLTG+HET  I+ F +GVANRGASIR+ R+   +G GYFEDRRPASN DPY +T ++ ET
Sbjct:  264 GGMKHIEAAIKKLEGRHKEHIAVYGEGNEKRLTGRHETGAIDQFSYGVANRGASIRIPREYTAKGYGYFEDRRPASNADPYRITGILMET 353          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.076e-26
Identity = 54/90 (60.00%), Postives = 70/90 (77.78%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 272
            GG + I++AI+KL  RH+EHIA YG+ N  RLTG+HET +I+ F +GVA+RG+SIR+ R   KEGKGYFEDRRPASN  PY +T ++ ET
Sbjct:  264 GGMKAIEEAIQKLSTRHAEHIAVYGDDNTLRLTGRHETGNIDAFSYGVADRGSSIRIPRSCAKEGKGYFEDRRPASNACPYQITGIMMET 353          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.711e-26
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 3
Query:    6 GFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 281
            G   I+ AI+KL  +H EHIA YGE N+ RLTGKHETA + TF  GVANRGASIR+ R    +G GY EDRRPASN+DPY VT+++ ETT+L
Sbjct:  265 GMAAIEDAIKKLEKKHLEHIAVYGEDNDLRLTGKHETASMTTFSAGVANRGASIRIPRHVGAQGYGYLEDRRPASNVDPYRVTAILVETTVL 356          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_DEBHA (Glutamine synthetase OS=Debaryomyces hansenii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.888e-26
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 272
            GG + I+ A+ KL  RH EH+  YG  N++RLTG+HETA I  F  GVANRGAS+R+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  261 GGMKSIEVALSKLAKRHKEHMLLYGADNDQRLTGRHETASIEGFSSGVANRGASVRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMVET 350          
The following BLAST results are available for this feature:
BLAST of CX297754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_NEUCR6.453e-2863.33Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_YARLI8.427e-2864.44Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_CANGA8.427e-2864.44Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA_ASHGO8.427e-2865.56Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA_SUIBO1.101e-2764.21Glutamine synthetase OS=Suillus bovinus GN=GLNA PE... [more]
GLNA_YEAST4.182e-2762.22Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNA_COLGL5.462e-2763.33Glutamine synthetase OS=Colletotrichum gloeosporio... [more]
GLNA_TUBBO2.076e-2660.00Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]
GLNA_CRYNE2.711e-2661.96Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_DEBHA7.888e-2660.00Glutamine synthetase OS=Debaryomyces hansenii GN=G... [more]

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Properties
Property NameValue
Genbank descriptionC06004H05SK RindPdig24 Citrus clementina cDNA clone C06004H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297754 ID=CX297754; Name=CX297754; organism=Citrus clementina; type=EST; length=563bp
AGGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGG
CACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCAC
TGGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCTA
ACCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAAG
GGTTACTTTGAGGACAGGAGACCTGCTTCTAACATGGATCCATATGTTGT
CACCTCCATGATTGCAGAAACCACTATTCTGTGGAAGCCATGAATGCTCC
TCTAGCAACCTTTGAAATATTTTGTTTGATCTGCTGGCTTTACTCAGGAT
TCACGAGTTCACGACAGAATTGTGTTCTGCTAAGGATGCTTTATTAGTAG
TAGTTCAGCTTTTGTCTTGTTTCAATCTCTGCCCCTGTATTTGCAACAGT
GGGTTCATTGCTTCCTGCTGTCCTATTGGGTTGAATAATGTAAACATTTA
ATTTAATAACATTATGGAAGGGTCAATTCCTTTTGTTCAAAAAAAAAAAA
AAAAAAAAAAAAA
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