CX297754

Overview
NameCX297754
Unique NameCX297754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.223e-20
Identity = 50/96 (52.08%), Postives = 62/96 (64.58%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 278
            GG   I+ A+  L   H E +  Y    GE N RRLTG+HET+  + F WGVANRG SIR+ R    E KGY EDRRP+SN DPY VT+MIA++ +
Sbjct:  271 GGIAAIEAAMTGLKRTHLEAMKVYDPHGGEDNLRRLTGRHETSSADKFSWGVANRGCSIRIPRQVAAERKGYLEDRRPSSNCDPYQVTAMIAQSIL 366          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_PANAR (Glutamine synthetase OS=Panulirus argus PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.468e-20
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 3
Query:    6 GFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 281
            G   I+ AI+KL   H +HI AY    G+ NERRLTG +ET+ I+ F  GVANRGASIR+ R   +E  GY EDRRP+SN DPYVV+  +  T  L
Sbjct:  263 GILEIESAIDKLSKVHEKHIKAYDPHAGKDNERRLTGHYETSSIHDFSAGVANRGASIRIPRGVAEEKTGYLEDRRPSSNADPYVVSERLVRTICL 358          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 4.192e-19
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 3
Query:    6 GFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 281
            G + IK+AIEKL  RH  HI AY    G  N RRLTG H+T++IN F  GVA+R ASIR+ R   +E KGYFE R P++N DP+ VT  I  T +L
Sbjct:  266 GLKHIKEAIEKLSKRHRYHIRAYDPKGGLDNARRLTGFHKTSNINDFSAGVADRSASIRIPRTVGQEKKGYFEARCPSANCDPFAVTEAIVRTCLL 361          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.081e-18
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 3
Query:    9 FEVIKKAIEKLG--LRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 272
            ++ I  A E LG   +  +H+  YG G + RLTG HETA  N + +GV++RGAS+R+    EK+GKGY EDRRP +N+DPYVVT ++ +T
Sbjct:  243 YDAIITAAESLGEGSKPLDHVKNYGAGIDDRLTGLHETAPWNEYSYGVSDRGASVRIPWQVEKDGKGYIEDRRPNANVDPYVVTRLLVDT 332          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.004e-17
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 3
Query:    6 GFEVIKKAIEKLGL--RHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 272
            G++ I  A E LG   +  EH+  YG G E RLTG HETA  + + +G ++RGAS+R+    E E KGY EDRRP +N+DPYVVT ++ +T
Sbjct:  239 GYDPIITACEALGQDDKPLEHVRQYGTGIEDRLTGAHETAPWDAYSYGASDRGASVRIPWQVEVEKKGYIEDRRPNANVDPYVVTRLMVDT 329          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.741e-17
Identity = 47/89 (52.81%), Postives = 56/89 (62.92%), Query Frame = 3
Query:    9 FEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEG-KGYFEDRRPASNMDPYVVTSMIAET 272
            FE +  A +K      +HIA YG  N++RLTGKHETA  N F +GVA+RGASIRV       G KGY EDRRP S  DPY + S I +T
Sbjct:  247 FEALMAAFDK---NLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRVPHSFVNNGYKGYLEDRRPNSQGDPYQIASQILKT 332          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 8.181e-15
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD-TEKEGKGYFEDRRPASNMDPYVV 251
            GG E  +  +        +HIA YG  N++RLTGKHETA  N F +GVA+RGASIRV     + + KGY EDRRP S  DPY +
Sbjct:  239 GGKEYFEALMASSDKNLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRVPHSFIKNDYKGYLEDRRPNSQGDPYQI 322          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.217e-11
Identity = 40/80 (50.00%), Postives = 45/80 (56.25%), Query Frame = 3
Query:    9 FEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD-TEKEGKGYFEDRRPASNMDPY 245
            FE +  A EK      +HI  YG  N  RLTGKHETA  + F +GVA+RGASIRV          GY EDRR  S  DPY
Sbjct:  247 FEALMAAFEK---NLHDHINVYGPDNHLRLTGKHETAPWDKFSYGVADRGASIRVPHSFVNNAYPGYLEDRRANSQGDPY 323          
BLAST of CX297754 vs. ExPASy Swiss-Prot
Match: GLNA_VITSX (Glutamine synthetase (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 36/51 (70.59%), Postives = 36/51 (70.59%), Query Frame = 3
Query:    3 GGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANR 155
            GGFEVIKK        H EHIAAYGEGNER     HETADINTF WGVANR
Sbjct:   14 GGFEVIKK--------HKEHIAAYGEGNER-----HETADINTFLWGVANR 51          
The following BLAST results are available for this feature:
BLAST of CX297754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_CAEEL2.223e-2052.08Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA_PANAR6.468e-2053.13Glutamine synthetase OS=Panulirus argus PE=2 SV=1[more]
GLNA_CRIGR4.192e-1953.13Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]
GLNA2_STRVR2.081e-1848.89Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY3.004e-1748.35Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_BRAJA8.741e-1752.81Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHILP8.181e-1550.00Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_RHIME3.217e-1150.00Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]
GLNA_VITSX7.167e-1170.59Glutamine synthetase (Fragments) OS=Vitis sp. PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC06004H05SK RindPdig24 Citrus clementina cDNA clone C06004H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297754 ID=CX297754; Name=CX297754; organism=Citrus clementina; type=EST; length=563bp
AGGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGG
CACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCAC
TGGCAAACATGAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCTA
ACCGTGGGGCATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAAG
GGTTACTTTGAGGACAGGAGACCTGCTTCTAACATGGATCCATATGTTGT
CACCTCCATGATTGCAGAAACCACTATTCTGTGGAAGCCATGAATGCTCC
TCTAGCAACCTTTGAAATATTTTGTTTGATCTGCTGGCTTTACTCAGGAT
TCACGAGTTCACGACAGAATTGTGTTCTGCTAAGGATGCTTTATTAGTAG
TAGTTCAGCTTTTGTCTTGTTTCAATCTCTGCCCCTGTATTTGCAACAGT
GGGTTCATTGCTTCCTGCTGTCCTATTGGGTTGAATAATGTAAACATTTA
ATTTAATAACATTATGGAAGGGTCAATTCCTTTTGTTCAAAAAAAAAAAA
AAAAAAAAAAAAA
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