CX297757

Overview
NameCX297757
Unique NameCX297757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 35/80 (43.75%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 241
            +L + ++V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++ + FLFKWWD+L    LN+ +D + I+++
Sbjct:  152 ILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAETFLFKWWDNLNH--LNQFVDHEKIYRI 227          
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 36/80 (45.00%), Postives = 61/80 (76.25%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 241
            +LF+ ++V++NP+P+E+  Y YV++E+LKE+L+K   GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH++
Sbjct:  152 ILFLRKNVTLNPDPNEIKSYCYVSKEELKEILKKEARGE--IKLTPWFKIIADAFLFKWWDNLNH--LSPFVDHEKIHRM 227          
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 35/80 (43.75%), Postives = 62/80 (77.50%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 241
            +L + ++V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++   FLFKWWD+L    LN+ +D + I+++
Sbjct:  152 ILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 227          
BLAST of CX297757 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 35/80 (43.75%), Postives = 60/80 (75.00%), Query Frame = 2
Query:    2 LLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 241
            +L + ++V++NP+P+E+  Y YV +E+L+EL+ KA  GE  +K++PWF+++ D FLFKWWD+L +  LN  +D + IH++
Sbjct:  152 ILLVKKNVTLNPDPNEIKSYCYVTKEELEELIGKAAHGE--IKITPWFQIIADTFLFKWWDNLNR--LNLFVDHEKIHRM 227          
The following BLAST results are available for this feature:
BLAST of CX297757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
IDI1_PONAB2.797e-1643.75Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_RAT4.772e-1645.00Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI1_HUMAN8.139e-1643.75Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]
IDI1_BOVIN1.388e-1543.75Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]

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Properties
Property NameValue
Genbank descriptionC06004H08SK RindPdig24 Citrus clementina cDNA clone C06004H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297757 ID=CX297757; Name=CX297757; organism=Citrus clementina; type=EST; length=678bp
CTTACTTTTCATTGTCCGAGATGTTAGTGTTAACCCAAATCCTGATGAAG
TAGCCGAGTATAAATATGTCAACCGGGAACAGTTAAAAGAGCTTTTGAGG
AAAGCAGATGCTGGAGAAGAAGGTTTGAAGCTGTCTCCTTGGTTCAGACT
GGTTGTGGACAATTTCTTGTTCAAGTGGTGGGATCACCTCGAAAAAGGTA
CCCTTAACGAAGTCATTGACATGAAGACCATTCACAAGTTGACTTAATAA
AGCCGCAGGCCCTTGAAACACAGTATTTGTGTGCCGGAACCTGTATTCCA
ATAAGTTTGGGCATTTGAGAGTTCTTCAAGACATTAAGGGTACACAGTAT
CTTCTCACCGGTTTCTTTATTCCAATAAATTTGGATATGCGAGAGTTCTA
CACAGATTAGCATTTTGTTGTTGACGTTACCTTATCTTTTCGTATGTGCT
GCTTTTATGGAATTTTATTGTTAAGTTTGTAATTTTGACATTACATATGG
TTTAGTAAAAAAATAAAAATCTGCTTCTTCTATTAAAAATGCAGTTGATT
TTAGTTTATTTTTCTGAAGTTGTACTAGATTTGAGCCTTGTGAAGCCTCA
TTTGCTGGTAAAGAAATGAAGAATTAGTGCTGTTTGGCTATTTGTTTTAT
GTCGGAAGTTCAGTAATCTGTTTTTCGT
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