CX297760

Overview
NameCX297760
Unique NameCX297760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 82/215 (38.14%), Postives = 127/215 (59.07%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            +G+C    ++LL+Y +M N S+ Y L E   G P LDW TR R+A GAA GL YLH+ C P I+HRD+K++N+LL + F A + DFGLA+L+    T+VTT + GT+G+I PEY     ++ + DV+ +G++LLEL+TG+R +D  +                  EKR   I D  +    + +E+  ++++A  C   +P+ RP   ++V  LE
Sbjct:  803 LGYCNYKNDKLLIYSYMDNGSLDYWLHEKVDGPPSLDWKTRLRIARGAAEGLAYLHQSCEPHILHRDIKSSNILLSDTFVAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGRRPMDVCK--PRGSRDLISWVLQMKTEKRESEIFDPFIYDKDHAEEMLLVLEIACRCLGENPKTRPTTQQLVSWLE 1015          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.693e-38
Identity = 84/216 (38.89%), Postives = 127/216 (58.80%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGE 655
            G C    E LLVY +++N S+A  L   +     LDW TR +V +G A+GL YLHE    KI+HRD+KA NVLLD    A + DFGLAKL +   T+++T++ GT+G++APEY   G  +++ DV+ +G++ LE+V+G+   ++                    +  L  +VD +L  +++ +E   M+ +ALLCT  SP  RP MS VV ML+G+
Sbjct:  728 GCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNY--RPKEEFIYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSMLQGK 941          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.693e-38
Identity = 92/217 (42.40%), Postives = 128/217 (58.99%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLD-AIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGE 655
            G C     R+LVY ++ N S+   L   K     LDW TR  + LG ARGL YLHE  + +I+HRDVKA+N+LLD      + DFGLAKL D +KT+++T+V GT+G++APEY   G  +E+TDV+ +G++ LELV+G+   D                     EK  D  ++D  L  ++N++E + MI +ALLCTQ S   RP MS VV ML G+
Sbjct:  755 GCCFEGEHRMLVYEYLPNGSLDQALFGDKTLH--LDWSTRYEICLGVARGLVYLHEEASVRIVHRDVKASNILLDSRLVPQISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKTDVYAFGVVALELVSGRPNSD---ENLEEEKKYLLEWAWNLHEKSRDIELIDDKLT-DFNMEEAKRMIGIALLCTQTSHALRPPMSRVVAMLSGD 965          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.693e-38
Identity = 80/224 (35.71%), Postives = 127/224 (56.70%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWE 676
            +G+C     R+LVY F+ N ++   +         L W  R  + LG A+GL YLHE   PK++HRD+K++N+LLD  + A V DFGLAKL+    + VTT+V GT G++APEY  TG  +E++D++ +GI+++E++TG+  +D+SR                 R  R + +VD  + +  + + ++ ++ VAL C       RP M  ++ MLE E L  R E
Sbjct:  214 LGYCVEGAYRMLVYDFVDNGNLEQWIHGDVGDVSPLTWDIRMNIILGMAKGLAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAKLLGSESSYVTTRVMGTFGYVAPEYACTGMLNEKSDIYSFGILIMEIITGRNPVDYSRPQGETNLVDWLKSMVGNR--RSEEVVDPKIPEPPSSKALKRVLLVALRCVDPDANKRPKMGHIIHMLEAEDLLYRDE 435          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.517e-38
Identity = 92/216 (42.59%), Postives = 126/216 (58.33%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGE 655
            G C     RLLVY ++ N S+   L   K     LDW TR  + LG ARGL YLHE    +I+HRDVKA+N+LLD      V DFGLAKL D +KT+++T+V GT+G++APEY   G  +E+TDV+ +G++ LELV+G+   D                     + R   ++D  L + +N++E + MI +ALLCTQ S   RP MS VV ML G+
Sbjct:  754 GCCYEGEHRLLVYEYLPNGSLDQALFGEKTLH--LDWSTRYEICLGVARGLVYLHEEARLRIVHRDVKASNILLDSKLVPKVSDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKTDVYAFGVVALELVSGRPNSD--ENLEDEKRYLLEWAWNLHEKGREVELIDHQLTE-FNMEEGKRMIGIALLCTQTSHALRPPMSRVVAMLSGD 964          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: ERL2_ARATH (LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.517e-38
Identity = 88/214 (41.12%), Postives = 133/214 (62.15%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPV-LDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRML 646
            G+  +P   LL Y +M+N S+   L    PG+ V LDW TR ++A+GAA+GL YLH  C P+IIHRD+K++N+LLD +FEA + DFG+AK +   KT  +T V GT+G+I PEY  T + +E++D++ +GI+LLEL+TG++A+D                      + +DA V      + +I++     Q+ALLCT+ +P +RP M EV R+L
Sbjct:  712 GYALSPFGNLLFYDYMENGSLWDLLHG--PGKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDGNFEARLSDFGIAKSIPATKTYASTYVLGTIGYIDPEYARTSRLNEKSDIYSFGIVLLELLTGKKAVDNEANLHQMILSKADDNTVM---EAVDAEVSVTCMDSGHIKKT---FQLALLCTKRNPLERPTMQEVSRVL 917          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.593e-38
Identity = 93/219 (42.47%), Postives = 134/219 (61.19%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEP--VLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLV-DVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAID-FSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            +GFC    E++LVY ++ N S    LR+   G+    LDW  R ++ALG+ +GL YLHE  +P IIHRDVK+ N+LLDE   A V DFGL+KLV D  K +VTTQV+GTMG++ PEY  T + +E++DV+G+G+++LEL+TG+  ID  S                   ++ LD  + +N   + N++  E  + VAL C +    +RP MSEVV+ LE
Sbjct:  694 LGFCFDQKEQMLVYEYIPNGS----LRDGLSGKNGVKLDWTRRLKIALGSGKGLAYLHELADPPIIHRDVKSNNILLDEHLTAKVADFGLSKLVGDPEKAHVTTQVKGTMGYLDPEYYMTNQLTEKSDVYGFGVVMLELLTGKSPIDRGSYVVKEVKKKMDKSRNLYDLQELLDTTIIQN---SGNLKGFEKYVDVALQCVEPEGVNRPTMSEVVQELE 905          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: CRK33_ARATH (Putative cysteine-rich receptor-like protein kinase 33 OS=Arabidopsis thaliana GN=CRK33 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.633e-37
Identity = 86/221 (38.91%), Postives = 128/221 (57.92%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLRE-IKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNV-TTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGL 661
            +GFC    E++LVY F+ N S+   L E  K G+  LDW  R ++ +G ARG+ YLH     KIIHRD+KA+N+LLD + E  V DFG+A++  V ++   T +V GT G+I+PEYL  G+ S ++DV+ +G+++LE+++G+R  +F                       L+ +VD  L KNY   EV   I +ALLC Q  PE RP +S ++ ML    +
Sbjct:  381 LGFCMEGEEKILVYEFVPNKSLDQFLFEPTKKGQ--LDWAKRYKIIVGTARGILYLHHDSPLKIIHRDLKASNILLDAEMEPKVADFGMARIFRVDQSRADTRRVVGTHGYISPEYLMHGQFSVKSDVYSFGVLVLEIISGKRNSNFHETDESGKNLVTYAWRHWRNGSPLE-LVDSELEKNYQSNEVFRCIHIALLCVQNDPEQRPNLSTIIMMLTSNSI 598          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.663e-37
Identity = 82/215 (38.14%), Postives = 125/215 (58.14%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDV-RKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRML 646
            IG+C    +RLLVY FM   S+   L ++ P +  LDW  R ++A GAA+GLE+LH+  NP +I+RD K++N+LLDE F   + DFGLAKL     K++V+T+V GT G+ APEY  TG+ + ++DV+ +G++ LEL+TG++AID                    R K +  + D  L   +  + +   + VA +C Q     RP +++VV  L
Sbjct:  147 IGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEALDWNMRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLDEGFHPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSEMPHGEQNLVAWARPLFNDRRKFI-KLADPRLKGRFPTRALYQALAVASMCIQEQAATRPLIADVVTAL 360          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.131e-36
Identity = 83/216 (38.43%), Postives = 125/216 (57.87%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVR-KTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            +G+C    +++LVYPFM N S+  RL        +LDW TR  +ALGAARGL YLH      +IHRDVK++N+LLD+   A V DFG +K       + V+ +VRGT G++ PEY  T + SE++DVF +G++LLE+V+G+  ++  R                 R  ++D IVD  +   Y+ + +  +++VAL C +     RP M ++VR LE
Sbjct:  656 LGYCNEYDQQILVYPFMSNGSLLDRLYGEASKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKR--PRIEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELE 869          
The following BLAST results are available for this feature:
BLAST of CX297760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 316
Match NameE-valueIdentityDescription
PSKR1_DAUCA1.209e-3838.14Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
Y5344_ARATH2.693e-3838.89Probable LRR receptor-like serine/threonine-protei... [more]
Y1561_ARATH2.693e-3842.40Probable LRR receptor-like serine/threonine-protei... [more]
Y1154_ARATH2.693e-3835.71Probable serine/threonine-protein kinase At1g01540... [more]
Y5614_ARATH3.517e-3842.59Probable LRR receptor-like serine/threonine-protei... [more]
ERL2_ARATH3.517e-3841.12LRR receptor-like serine/threonine-protein kinase ... [more]
Y5977_ARATH4.593e-3842.47Probable leucine-rich repeat receptor-like protein... [more]
CRK33_ARATH6.633e-3738.91Putative cysteine-rich receptor-like protein kinas... [more]
PBS1_ARATH8.663e-3738.14Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
NORK_MEDTR1.131e-3638.43Nodulation receptor kinase OS=Medicago truncatula ... [more]

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Properties
Property NameValue
Genbank descriptionC06004H11SK RindPdig24 Citrus clementina cDNA clone C06004H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297760 ID=CX297760; Name=CX297760; organism=Citrus clementina; type=EST; length=688bp
GAGGATTGGATTTTGCACAACACCTACTGAACGTCTCTTGGTGTATCCAT
TTATGCAGAACTTGAGTGTAGCCTATCGCTTACGAGAAATTAAACCTGGA
GAGCCTGTTTTGGACTGGGTTACAAGAAAACGAGTGGCATTAGGTGCAGC
ACGTGGCCTGGAATATCTTCATGAGCATTGCAATCCTAAGATCATACATC
GGGATGTGAAGGCTGCAAATGTATTACTGGATGAAGATTTTGAAGCAGTT
GTTGGTGACTTTGGATTGGCAAAATTGGTGGACGTGAGAAAGACTAATGT
GACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCTGAGTACTTGT
CCACTGGGAAATCATCAGAAAGGACAGATGTTTTTGGTTATGGGATTATG
CTTCTGGAGCTTGTAACAGGTCAAAGGGCAATTGACTTTTCACGTTTGGA
AGAAGAAGATGATGTCCTATTGCTTGACCATGTCAAGAAGCTAGAGAGAG
AGAAAAGGTTGGATGCTATTGTAGATCGCAACCTTAATAAGAATTACAAC
ATCCAAGAGGTGGAGACAATGATTCAAGTTGCACTGCTCTGCACACAAGC
ATCACCAGAGGACCGTCCAGCAATGTCAGAGGTGGTGCGGATGTTGGAAG
GAGAGGGTCTAGCTGAGAGGTGGGAAGAGTGGCAGCAT
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