CX297760

Overview
NameCX297760
Unique NameCX297760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: PSYR1_ARATH (Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 76/214 (35.51%), Postives = 129/214 (60.28%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            G+C   + R+L+Y FM+N S+ Y L E   G   LDW  R  +  GA+ GL Y+H+ C P I+HRD+K++N+LLD +F+A V DFGL++L+   +T+VTT++ GT+G+I PEY     ++ R DV+ +G+++LEL+TG+R ++  R                 R+ + + + D  L ++ N + +  ++ +A +C   +P  RP + +VV  L+
Sbjct:  864 GYCVHDSARILIYSFMENGSLDYWLHENPEGPAQLDWPKRLNIMRGASSGLAYMHQICEPHIVHRDIKSSNILLDGNFKAYVADFGLSRLILPYRTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGKRPMEVFR--PKMSRELVAWVHTMKRDGKPEEVFDTLLRESGNEEAMLRVLDIACMCVNQNPMKRPNIQQVVDWLK 1075          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 83/216 (38.43%), Postives = 124/216 (57.41%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVR-KTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            +G+C    +++LVYPFM N S+  RL        +LDW TR  +ALGAARGL YLH      +IHRDVK++N+LLD    A V DFG +K       + V+ +VRGT G++ PEY  T + SE++DVF +G++LLE+V+G+  ++  R                 R  ++D IVD  +   Y+ + +  +++VAL C +     RP M ++VR LE
Sbjct:  655 LGYCNEYDQQILVYPFMSNGSLLDRLYGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKR--PRVEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELE 868          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: MEE39_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MEE39 OS=Arabidopsis thaliana GN=MEE39 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.930e-36
Identity = 83/213 (38.97%), Postives = 125/213 (58.69%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDV--RKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVV 637
            +G+C       L+Y +M N  +   L   K G  VL+W TR ++A+ AA GLEYLH  C P ++HRDVK+ N+LLDE+F+A + DFGL++   V   ++ V+T V GT+G++ PEY  T + SE++DV+ +GI+LLE++T QR ID +R                 ++     IVD  L+ NY+   V   ++VA+ C   S   RP MS+V+
Sbjct:  626 VGYCDEQDHFALIYEYMSNGDLHQHLSG-KHGGSVLNWGTRLQIAIEAALGLEYLHTGCKPAMVHRDVKSTNILLDEEFKAKIADFGLSRSFQVGGDQSQVSTVVAGTLGYLDPEYYLTSELSEKSDVYSFGILLLEIITNQRVIDQTR----ENPNIAEWVTFVIKKGDTSQIVDPKLHGNYDTHSVWRALEVAMSCANPSSVKRPNMSQVI 833          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: IKU2_ARATH (Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.521e-36
Identity = 83/218 (38.07%), Postives = 132/218 (60.55%), Query Frame = 2
Query:   11 FCTTPTE--RLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLV---DVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            FC+   E  +LLVY +M N S+  +L E + GE  + W  R+ +ALGAA+GLEYLH   +  +IHRDVK++N+LLDE++   + DFGLAK++    V++      V+GT+G+IAPEY  T K +E++DV+ +G++L+ELVTG++ ++                      + +  ++D ++   Y  ++   ++ +ALLCT  SP+ RP M  VV MLE
Sbjct:  749 FCSITCEDSKLLVYEYMPNGSLWEQLHE-RRGEQEIGWRVRQALALGAAKGLEYLHHGLDRPVIHRDVKSSNILLDEEWRPRIADFGLAKIIQADSVQRDFSAPLVKGTLGYIAPEYAYTTKVNEKSDVYSFGVVLMELVTGKKPLETDFGENNDIVMWVWSVSKETNREMMMKLIDTSIEDEYK-EDALKVLTIALLCTDKSPQARPFMKSVVSMLE 964          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: ERECT_ARATH (LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.521e-36
Identity = 84/213 (39.44%), Postives = 131/213 (61.50%), Query Frame = 2
Query:   35 LLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKN-YNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAER 670
            LL Y +++N S+ + L      +  LDW TR ++A GAA+GL YLH  C+P+IIHRDVK++N+LLD+D EA + DFG+AK + V K++ +T V GT+G+I PEY  T + +E++DV+ YGI+LLEL+T ++A+D                        +  + D ++     ++  V+ + Q+ALLCT+  P DRP M +V R+L    L+E+
Sbjct:  718 LLFYDYLENGSL-WDLLHGPTKKKTLDWDTRLKIAYGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDLEARLTDFGIAKSLCVSKSHTSTYVMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTRRKAVD-------DESNLHHLIMSKTGNNEVMEMADPDITSTCKDLGVVKKVFQLALLCTKRQPNDRPTMHQVTRVLGSFMLSEQ 922          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.292e-36
Identity = 87/212 (41.04%), Postives = 127/212 (59.91%), Query Frame = 2
Query:   35 LLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDA-IVDRNLNK---NYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEG 658
            LL+Y +M   S+   L   K     +DW TR  +ALGAA GL YLH  C P+IIHRD+K+ N+L+DE+FEA VGDFGLAK++D+  +   + V G+ G+IAPEY  T K +E+ D++ +G++LLEL+TG+  +                     R+  L + I+D  L K   +  +  + T+ ++A+LCT++SP DRP M EVV ML   G
Sbjct:  898 LLLYEYMSRGSLGELLHGGKSHS--MDWPTRFAIALGAAEGLAYLHHDCKPRIIHRDIKSNNILIDENFEAHVGDFGLAKVIDMPLSKSVSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELLTGKAPVQ----PLEQGGDLATWTRNHIRDHSLTSEILDPYLTKVEDDVILNHMITVTKIAVLCTKSSPSDRPTMREVVLMLIESG 1103          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y1755_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07550 OS=Arabidopsis thaliana GN=At1g07550 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36
Identity = 83/228 (36.40%), Postives = 129/228 (56.58%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRML-EGEGLAERWEEWQ 685
            IG+C       L+Y  M   ++   L   KPG  VL W  R ++AL +A G+EYLH  C PKI+HRDVK+ N+LL E+FEA + DFGL++   +      T V GT G++ PEY  T   S ++DV+ +G++LLE+++GQ  ID SR                     +++IVD NL+++Y+      ++++A+ C   + ++RP MS+VV +L E     E+W + Q
Sbjct:  619 IGYCDDDNGLALIYELMGKGNLKEHLSG-KPGCSVLSWPIRLKIALESAIGIEYLHTGCKPKIVHRDVKSTNILLSEEFEAKIADFGLSRSFLIGNEAQPTVVAGTFGYLDPEYHKTSLLSMKSDVYSFGVVLLEIISGQDVIDLSR----ENCNIVEWTSFILENGDIESIVDPNLHQDYDTSSAWKVVELAMSCVNRTSKERPNMSQVVHVLNECLETCEKWRKSQ 841          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.578e-36
Identity = 88/220 (40.00%), Postives = 128/220 (58.18%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRL-----REIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDV-RKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRML 646
            IG+C    +RLLVY FM   S+   L     ++ KP    L W+ R +VAL AA+GL +LH     K+I+RD+KA+N+LLD DF A + DFGLA+   +  ++ V+T+V GT G+ APEY+STG  + R+DV+ +G++LLEL+ G++A+D +R                 R K L  IVD  LN  Y  +    +  +A+ C    P+ RP M +VVR L
Sbjct:  131 IGYCLEDEQRLLVYEFMHKGSLENHLFANGNKDFKP----LSWILRIKVALDAAKGLAFLHSD-PVKVIYRDIKASNILLDSDFNAKLSDFGLARDGPMGEQSYVSTRVMGTFGYAAPEYVSTGHLNARSDVYSFGVVLLELLCGRQALDHNRPAKEQNLVDWARPYLTSRRKVL-LIVDTRLNSQYKPEGAVRLASIAVQCLSFEPKSRPTMDQVVRAL 344          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.134e-35
Identity = 90/221 (40.72%), Postives = 126/221 (57.01%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVD----VRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQ---VALLCTQASPEDRPAMSEVVRML 646
            +G C     RLL+Y +M N S+   L E + G   L W  R ++ LGAA+GL YLH  C P I+HRD+KA N+L+  DFE  +GDFGLAKLVD     R +N    + G+ G+IAPEY  + K +E++DV+ YG+++LE++TG++ ID                    ++ R   ++D+ L       EVE M+Q   VALLC    PEDRP M +V  ML
Sbjct:  855 LGCCWNKNTRLLMYDYMSNGSLGSLLHE-RSGVCSLGWEVRYKIILGAAQGLAYLHHDCVPPIVHRDIKANNILIGPDFEPYIGDFGLAKLVDDGDFARSSNT---IAGSYGYIAPEYGYSMKITEKSDVYSYGVVVLEVLTGKQPID-------PTIPDGLHIVDWVKKIRDIQVIDQGLQARPE-SEVEEMMQTLGVALLCINPIPEDRPTMKDVAAML 1063          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: CRK4_ARATH (Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.134e-35
Identity = 78/221 (35.29%), Postives = 125/221 (56.56%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTT-QVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLA 664
            +GFC    ER+LVY F+ N S+ Y + +    + +LDW  R ++  G ARG+ YLH+     IIHRD+KA N+LL +D  A + DFG+A++  + +T   T ++ GT G+++PEY   G+ S ++DV+ +G+++LE+++G++  +  +                        +VD +   NY I EV   I +ALLC Q   EDRP MS +V+ML    +A
Sbjct:  411 LGFCLERDERILVYEFVPNKSLDYFIFD-STMQSLLDWTRRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLGDDMNAKIADFGMARIFGMDQTEANTRRIVGTYGYMSPEYAMYGQFSMKSDVYSFGVLVLEIISGKKNSNVYQMDGTSAGNLVTYTWRLWSNGSPLELVDPSFRDNYRINEVSRCIHIALLCVQEEAEDRPTMSAIVQMLTTSSIA 630          
The following BLAST results are available for this feature:
BLAST of CX297760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 316
Match NameE-valueIdentityDescription
PSYR1_ARATH1.930e-3635.51Tyrosine-sulfated glycopeptide receptor 1 OS=Arabi... [more]
NORK_PEA1.930e-3638.43Nodulation receptor kinase OS=Pisum sativum GN=NOR... [more]
MEE39_ARATH1.930e-3638.97Probable LRR receptor-like serine/threonine-protei... [more]
IKU2_ARATH2.521e-3638.07Receptor-like protein kinase HAIKU2 OS=Arabidopsis... [more]
ERECT_ARATH2.521e-3639.44LRR receptor-like serine/threonine-protein kinase ... [more]
Y2317_ARATH3.292e-3641.04Probable leucine-rich repeat receptor-like protein... [more]
Y1755_ARATH5.615e-3636.40Probable LRR receptor-like serine/threonine-protei... [more]
Y3545_ARATH9.578e-3640.00Probable receptor-like protein kinase At3g55450 OS... [more]
RCH1_ARATH2.134e-3540.72LRR receptor-like serine/threonine-protein kinase ... [more]
CRK4_ARATH2.134e-3535.29Cysteine-rich receptor-like protein kinase 4 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionC06004H11SK RindPdig24 Citrus clementina cDNA clone C06004H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297760 ID=CX297760; Name=CX297760; organism=Citrus clementina; type=EST; length=688bp
GAGGATTGGATTTTGCACAACACCTACTGAACGTCTCTTGGTGTATCCAT
TTATGCAGAACTTGAGTGTAGCCTATCGCTTACGAGAAATTAAACCTGGA
GAGCCTGTTTTGGACTGGGTTACAAGAAAACGAGTGGCATTAGGTGCAGC
ACGTGGCCTGGAATATCTTCATGAGCATTGCAATCCTAAGATCATACATC
GGGATGTGAAGGCTGCAAATGTATTACTGGATGAAGATTTTGAAGCAGTT
GTTGGTGACTTTGGATTGGCAAAATTGGTGGACGTGAGAAAGACTAATGT
GACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCTGAGTACTTGT
CCACTGGGAAATCATCAGAAAGGACAGATGTTTTTGGTTATGGGATTATG
CTTCTGGAGCTTGTAACAGGTCAAAGGGCAATTGACTTTTCACGTTTGGA
AGAAGAAGATGATGTCCTATTGCTTGACCATGTCAAGAAGCTAGAGAGAG
AGAAAAGGTTGGATGCTATTGTAGATCGCAACCTTAATAAGAATTACAAC
ATCCAAGAGGTGGAGACAATGATTCAAGTTGCACTGCTCTGCACACAAGC
ATCACCAGAGGACCGTCCAGCAATGTCAGAGGTGGTGCGGATGTTGGAAG
GAGAGGGTCTAGCTGAGAGGTGGGAAGAGTGGCAGCAT
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