CX297760

Overview
NameCX297760
Unique NameCX297760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: WAK3_ARATH (Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 81/226 (35.84%), Postives = 126/226 (55.75%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEW 682
            +G C      LLVY F+ N ++   L      +  L W  R R+A+  A  L YLH   +  IIHRD+K AN+LLDE+  A V DFG +KL+ + K  +TT V+GT+G++ PEY +TG  +E++DV+ +G++L+EL++GQ+A+ F R                  E RL  I+D  +    N++E++   ++A  CT+   E+RP M EV   LE   + +   +W
Sbjct:  475 LGCCLETEVPLLVYEFITNGTLFDHLHG-SIFDSSLTWEHRLRIAIEVAGTLAYLHSSASIPIIHRDIKTANILLDENLTAKVADFGASKLIPMDKEQLTTMVQGTLGYLDPEYYTTGLLNEKSDVYSFGVVLMELLSGQKALCFER--PQASKHLVSYFVSATEENRLHEIIDDQVLNEDNLKEIQEAARIAAECTRLMGEERPRMKEVAAKLEALRVEKTKHKW 697          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 81/215 (37.67%), Postives = 126/215 (58.60%), Query Frame = 2
Query:   14 CTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDV---RKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            C++   +LLVY +M N S+A  L   + G  VL W  R R+AL AA GL YLH  C P I+HRDVK++N+LLD D+ A V DFG+AK+  +   +     + + G+ G+IAPEY+ T + +E++D++ +G++LLELVTG++  D                        L+ ++D  L+  +  +E+  +I + LLCT   P +RP+M +VV ML+
Sbjct:  756 CSSGDCKLLVYEYMPNGSLADVLHGDRKGGVVLGWPERLRIALDAAEGLSYLHHDCVPPIVHRDVKSSNILLDSDYGAKVADFGIAKVGQMSGSKTPEAMSGIAGSCGYIAPEYVYTLRVNEKSDIYSFGVVLLELVTGKQPTDSELGDKDMAKWVCTALDKCG----LEPVIDPKLDLKFK-EEISKVIHIGLLCTSPLPLNRPSMRKVVIMLQ 965          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: BRL1_ARATH (Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 84/220 (38.18%), Postives = 131/220 (59.55%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQ--NLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVT-TQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNL--NKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            +G+C    ERLLVY +M+  +L      +  K G   L+W  RK++A+GAARGL +LH  C P IIHRD+K++NVLLDEDFEA V DFG+A+LV    T+++ + + GT G++ PEY  + + + + DV+ YG++LLEL++G++ ID                    REKR   I+D  L  +K+ ++ E+   +++A  C    P  RP M +++ M +
Sbjct:  919 LGYCKVGEERLLVYEYMKWGSLETVLHEKSSKKGGIYLNWAARKKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDEDFEARVSDFGMARLVSALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKKPID--PGEFGEDNNLVGWAKQLYREKRGAEILDPELVTDKSGDV-ELFHYLKIASQCLDDRPFKRPTMIQLMAMFK 1135          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 85/216 (39.35%), Postives = 126/216 (58.33%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVR-KTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            +G+C     RLLVY FM   S+   L   + G   L W  R +VA+GAA+GL +LH+    ++I+RD KAAN+LLD +F + + DFGLAK      KT+V+TQV GT G+ APEY++TG+ + ++DV+ +G++LLEL++G+RA+D S+                 + K L  I+D  L   Y  +   T   +AL C     + RP MSEV+  L+
Sbjct:  153 VGYCVEGENRLLVYEFMPKGSLENHL--FRRGAQPLTWAIRMKVAIGAAKGLTFLHD-AKSQVIYRDFKAANILLDAEFNSKLSDFGLAKAGPTGDKTHVSTQVMGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKSKVGMEQSLVDWATPYLGDKRK-LFRIMDTRLGGQYPQKGAYTAASLALQCLNPDAKLRPKMSEVLAKLD 364          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: BRI1_ARATH (Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.359e-34
Identity = 81/218 (37.16%), Postives = 128/218 (58.72%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVT-TQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETM--IQVALLCTQASPEDRPAMSEVVRMLE 649
            +G+C    ERLLVY FM+  S+   L + K     L+W TR+++A+G+ARGL +LH +C+P IIHRD+K++NVLLDE+ EA V DFG+A+L+    T+++ + + GT G++ PEY  + + S + DV+ YG++LLEL+TG+R  D                     + R+  + D  L K     E+E +  ++VA+ C       RP M +V+ M +
Sbjct:  943 LGYCKVGDERLLVYEFMKYGSLEDVLHDPKKAGVKLNWSTRRKIAIGSARGLAFLHHNCSPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTD----SPDFGDNNLVGWVKQHAKLRISDVFDPELMKEDPALEIELLQHLKVAVACLDDRAWRRPTMVQVMAMFK 1156          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: CRK43_ARATH (Putative cysteine-rich receptor-like protein kinase 43 OS=Arabidopsis thaliana GN=CRK43 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.024e-34
Identity = 77/220 (35.00%), Postives = 133/220 (60.45%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLV-----DVRKTNVT-TQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRML 646
            +G C T     +VY F+ N S+ + L   +  +  LDW  R+ + LG A GLEYLHE C  KIIHRD+KA+N+LLD  ++  + DFGLAK       D+  ++++ + + GT+G++APEY+S G+ S + D + +G+++LE+ +G R   F                      +++ ++D+++ ++ + QE++ ++Q+ LLCTQ SP+ RP MS+V++M+
Sbjct:  391 LGCCFTNMNSFIVYEFLANTSLDHILFNPEKKKE-LDWKKRRTIILGTAEGLEYLHETC--KIIHRDIKASNILLDLKYKPKISDFGLAKFYPEGGKDIPASSLSPSSIAGTLGYMAPEYISKGRLSNKIDAYSFGVLVLEITSGFRNNKFRSDNSLETLVTQVWKCFA--SNKMEEMIDKDMGEDTDKQEMKRVMQIGLLCTQESPQLRPTMSKVIQMV 605          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 81/213 (38.03%), Postives = 120/213 (56.34%), Query Frame = 2
Query:    8 GFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRML 646
            G+CT   +RLLVY ++ N ++   L         L W  R +VALG A+ LEYLHE C P I+HR+ K+AN+LLDE+    + D GLA L    +  V+TQV G+ G+ APE+  +G  + ++DV+ +G+++LEL+TG++ +D SR                  +  L  +VD +LN  Y  + +     +  LC Q  PE RP MSEVV+ L
Sbjct:  458 GYCTEHGQRLLVYEYVGNGNLDDTLHTNDDRSMNLTWNARVKVALGTAKALEYLHEVCLPSIVHRNFKSANILLDEELNPHLSDSGLAALTPNTERQVSTQVVGSFGYSAPEFALSGIYTVKSDVYTFGVVMLELLTGRKPLDSSRTRAEQSLVRWATPQLHDID-ALSKMVDPSLNGMYPAKSLSRFADIIALCIQPEPEFRPPMSEVVQQL 669          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: RPK1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana GN=RPK1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 74/215 (34.42%), Postives = 124/215 (57.67%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            IG+  + TE  L+Y ++   ++   ++E    +  ++W    ++AL  AR L YLHE C+PK++HRD+K +N+LLD ++ A + DFGL+KL+   +++VTT V GT G++APEY  T + SE+ DV+ YGI+LLEL++ +RA+D S                   + +   +    L +     ++  ++ +AL CT  S   RP M + VR+L+
Sbjct:  321 IGYHASETEMFLIYNYLSGGNLQDFIKE--RSKAAIEWKVLHKIALDVARALSYLHEQCSPKVLHRDIKPSNILLDNNYNAYLSDFGLSKLLGTSQSHVTTGVAGTFGYVAPEYAMTCRVSEKADVYSYGIVLLELISDKRALDPSFSSHENGFNIVSWAHMMLSQGKAKEVFTTGLWETGPPDDLVEVLHLALKCTVDSLSIRPTMKQAVRLLK 533          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 83/216 (38.43%), Postives = 126/216 (58.33%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVR-KTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            IG+C     RLLVY FM   S+   L         L W TR R+ALGAARGL +LH +  P++I+RD KA+N+LLD ++ A + DFGLA+   +   ++V+T+V GT G+ APEYL+TG  S ++DV+ +G++LLEL++G+RAID                     ++RL  ++D  L   Y++     +  +AL C     + RP M+E+V+ +E
Sbjct:  138 IGYCLEEEHRLLVYEFMTRGSLENHLFRRGTFYQPLSWNTRVRMALGAARGLAFLH-NAQPQVIYRDFKASNILLDSNYNAKLSDFGLARDGPMGDNSHVSTRVMGTQGYAAPEYLATGHLSVKSDVYSFGVVLLELLSGRRAID-KNQPVGEHNLVDWARPYLTNKRRLLRVMDPRLQGQYSLTRALKIAVLALDCISIDAKSRPTMNEIVKTME 351          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: CRK16_ARATH (Putative cysteine-rich receptor-like protein kinase 16 OS=Arabidopsis thaliana GN=CRK16 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 79/215 (36.74%), Postives = 123/215 (57.21%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTT-QVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRML 646
            +GF     E++LVY +M N S+ Y L + +     LDW TR  +  G  RG+ YLH+     IIHRD+KA N+LLD D    + DFG+A+   V +T  TT +V GT G++ PEY++ G+ S ++DV+ +G+++LE++ G+++  F                    E  L+ +VD  + ++Y+  EV   I ++LLC Q +P DRP MS V +ML
Sbjct:  395 LGFSVEGEEKILVYEYMPNKSLDYFLFDHRR-RGQLDWRTRYNIIRGVTRGILYLHQDSRLTIIHRDLKAGNILLDVDMNPKIADFGVARNFRVDQTEATTGRVVGTFGYMPPEYVANGQFSMKSDVYSFGVLILEIIVGKKSSSFHEIDGSVGNLVTYVWRLWNNESFLE-LVDPAMGESYDKDEVIRCIHISLLCVQENPADRPTMSTVFQML 607          
The following BLAST results are available for this feature:
BLAST of CX297760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 316
Match NameE-valueIdentityDescription
WAK3_ARATH1.806e-3435.84Wall-associated receptor kinase 3 OS=Arabidopsis t... [more]
RLK5_ARATH1.806e-3437.67Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
BRL1_ARATH1.806e-3438.18Serine/threonine-protein kinase BRI1-like 1 OS=Ara... [more]
APK2B_ARATH1.806e-3439.35Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
BRI1_ARATH2.359e-3437.16Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidops... [more]
CRK43_ARATH4.024e-3435.00Putative cysteine-rich receptor-like protein kinas... [more]
SRF8_ARATH5.256e-3438.03Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
RPK1_ARATH5.256e-3434.42Probable LRR receptor-like serine/threonine-protei... [more]
NAK_ARATH5.256e-3438.43Probable serine/threonine-protein kinase NAK OS=Ar... [more]
CRK16_ARATH5.256e-3436.74Putative cysteine-rich receptor-like protein kinas... [more]

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Properties
Property NameValue
Genbank descriptionC06004H11SK RindPdig24 Citrus clementina cDNA clone C06004H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297760 ID=CX297760; Name=CX297760; organism=Citrus clementina; type=EST; length=688bp
GAGGATTGGATTTTGCACAACACCTACTGAACGTCTCTTGGTGTATCCAT
TTATGCAGAACTTGAGTGTAGCCTATCGCTTACGAGAAATTAAACCTGGA
GAGCCTGTTTTGGACTGGGTTACAAGAAAACGAGTGGCATTAGGTGCAGC
ACGTGGCCTGGAATATCTTCATGAGCATTGCAATCCTAAGATCATACATC
GGGATGTGAAGGCTGCAAATGTATTACTGGATGAAGATTTTGAAGCAGTT
GTTGGTGACTTTGGATTGGCAAAATTGGTGGACGTGAGAAAGACTAATGT
GACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCTGAGTACTTGT
CCACTGGGAAATCATCAGAAAGGACAGATGTTTTTGGTTATGGGATTATG
CTTCTGGAGCTTGTAACAGGTCAAAGGGCAATTGACTTTTCACGTTTGGA
AGAAGAAGATGATGTCCTATTGCTTGACCATGTCAAGAAGCTAGAGAGAG
AGAAAAGGTTGGATGCTATTGTAGATCGCAACCTTAATAAGAATTACAAC
ATCCAAGAGGTGGAGACAATGATTCAAGTTGCACTGCTCTGCACACAAGC
ATCACCAGAGGACCGTCCAGCAATGTCAGAGGTGGTGCGGATGTTGGAAG
GAGAGGGTCTAGCTGAGAGGTGGGAAGAGTGGCAGCAT
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