CX297760

Overview
NameCX297760
Unique NameCX297760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: BRL3_ARATH (Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 86/219 (39.27%), Postives = 131/219 (59.82%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLRE-IKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVT-TQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNL--NKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            +G+C    ERLLVY +M+  S+   L E  K G   LDW  RK++A+GAARGL +LH  C P IIHRD+K++NVLLD+DF A V DFG+A+LV    T+++ + + GT G++ PEY  + + + + DV+ YG++LLEL++G++ ID                    REKR   I+D  L  +K+ ++ E+   +++A  C    P  RP M +V+ M +
Sbjct:  918 LGYCKIGEERLLVYEYMKYGSLETVLHEKTKKGGIFLDWSARKKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDQDFVARVSDFGMARLVSALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKKPID--PEEFGEDNNLVGWAKQLYREKRGAEILDPELVTDKSGDV-ELLHYLKIASQCLDDRPFKRPTMIQVMTMFK 1133          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 87/216 (40.28%), Postives = 124/216 (57.41%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVR-KTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            +G+C     RLLVY FM   S+   L   + G   L W  R +VA+GAA+GL +LHE    ++I+RD KAAN+LLD DF A + DFGLAK       T+V+T+V GT G+ APEY++TG+ + ++DV+ +G++LLEL++G+RA+D S                  + K L  I+D  L   Y  +   T   +AL C     + RP MSEV+  LE
Sbjct:  156 VGYCAEGENRLLVYEFMPKGSLENHL--FRRGAQPLTWAIRMKVAVGAAKGLTFLHE-AKSQVIYRDFKAANILLDADFNAKLSDFGLAKAGPTGDNTHVSTKVIGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELISGRRAMDNSNGGNEYSLVDWATPYLGDKRK-LFRIMDTKLGGQYPQKGAFTAANLALQCLNPDAKLRPKMSEVLVTLE 367          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: RCH2_ARATH (Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.864e-34
Identity = 86/219 (39.27%), Postives = 124/219 (56.62%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKT-NVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQV---ALLCTQASPEDRPAMSEVVRMLE 649
            +G C     RLL+Y +M N S+   L E +     LDW  R R+ LGAA+GL YLH  C P I+HRD+KA N+L+  DFE  + DFGLAKLVD       +  V G+ G+IAPEY  + K +E++DV+ YG+++LE++TG++ ID                    R+ R    V  +  ++    E + M+QV   ALLC  +SP++RP M +V  ML+
Sbjct:  855 LGCCWNRNTRLLMYDYMPNGSLGSLLHERRGSS--LDWDLRYRILLGAAQGLAYLHHDCLPPIVHRDIKANNILIGLDFEPYIADFGLAKLVDEGDIGRCSNTVAGSYGYIAPEYGYSMKITEKSDVYSYGVVVLEVLTGKQPID-------PTVPEGIHLVDWVRQNRGSLEVLDSTLRSRTEAEADEMMQVLGTALLCVNSSPDERPTMKDVAAMLK 1064          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: CRK18_ARATH (Cysteine-rich receptor-like protein kinase 18 OS=Arabidopsis thaliana GN=CRK18 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.864e-34
Identity = 77/220 (35.00%), Postives = 126/220 (57.27%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTT-QVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGL 661
            +GF     E+LLVY F+ N S+ Y L +       LDW  R+ +  G  RG+ YLH+    KIIHRD+KA+N+LLD D    + DFG+A++  V +T   T +V GT G+++PEY++ G+ S ++DV+ +G+++LE+++G++   F +                   K L  ++D  +N+++  +EV   I + LLC Q +P DRP MS + +ML    +
Sbjct:  399 LGFSLQGEEKLLVYEFVSNKSLDYFLFDPTKRNQ-LDWTMRRNIIGGITRGILYLHQDSRLKIIHRDLKASNILLDADMNPKIADFGMARIFGVDQTVANTGRVVGTFGYMSPEYVTHGQFSMKSDVYSFGVLILEIISGKKNSSFYQ-MDGLVNNLVTYVWKLWENKSLHELLDPFINQDFTSEEVIRYIHIGLLCVQENPADRPTMSTIHQMLTNSSI 616          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: CRK31_ARATH (Putative cysteine-rich receptor-like protein kinase 31 OS=Arabidopsis thaliana GN=CRK31 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.965e-34
Identity = 78/220 (35.45%), Postives = 125/220 (56.82%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKT-NVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLEGEGL 661
            +GFC    E++LVY F+ N S+ Y L + K  +  LDW  R  +  G  RGL YLH+     IIHRD+KA+N+LLD D    + DFG+A+   V +T + T +V GT G++ PEY++ G+ S ++DV+ +G+++LE+V G++   F +                  +  LD ++D  + ++Y+  EV   I + +LC Q +P DRP MS + +ML    +
Sbjct:  399 LGFCIERDEQILVYEFVSNKSLDYFLFDPKM-KSQLDWKRRYNIIGGVTRGLLYLHQDSRLTIIHRDIKASNILLDADMNPKIADFGMARNFRVDQTEDQTGRVVGTFGYMPPEYVTHGQFSTKSDVYSFGVLILEIVCGKKNSSFFQMDDSGGNLVTHVWRLWNNDSPLD-LIDPAIKESYDNDEVIRCIHIGILCVQETPADRPEMSTIFQMLTNSSI 616          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y5596_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 78/212 (36.79%), Postives = 121/212 (57.08%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDV-RKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVV 637
            +G+C       L+Y F+ N  +   L   K G+P+++W TR R+A  AA GLEYLH  C P ++HRDVK  N+LLDE ++A + DFGL++   V  +++V+T + GT G++ PEY  T + SE++DV+ +GI+LLE++T Q  ID +R                   K    I+D  LN +Y+ +     +++A+ C   +   RP MS VV
Sbjct:  640 VGYCDEGDHLALIYEFVPNGDLRQHLSG-KGGKPIVNWGTRLRIAAEAALGLEYLHIGCTPPMVHRDVKTTNILLDEHYKAKLADFGLSRSFPVGGESHVSTVIAGTPGYLDPEYYHTSRLSEKSDVYSFGIVLLEMITNQAVIDRNRRKSHITQWVGSELNGGDIAK----IMDLKLNGDYDSRSAWRALELAMSCADPTSARRPTMSHVV 846          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y5005_ARATH (Probable receptor-like protein kinase At5g20050 OS=Arabidopsis thaliana GN=At5g20050 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 85/217 (39.17%), Postives = 122/217 (56.22%), Query Frame = 2
Query:   32 RLLVYPFMQNLSVAY-----RLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAI---DFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETM--IQVALLCTQASPEDRPAMSEVVRMLEG 652
            R LVY ++ N S+       R    + G   L W  R +VA+  A+ L YLH  C  KI+H DVK  N+LLDE+F AVV DFGL+KL+   ++ V T +RGT G++APE+L     SE++DV+ YGI+LLE++ G+R+I   +                    RE+++  IVD+ L +   + E E M  + VAL C Q   + RP M+ V+ MLEG
Sbjct:  174 RFLVYDYIVNSSLDIWIFPDRGNRGRSGGGCLSWEQRYQVAIDVAKALAYLHHDCRSKILHLDVKPENILLDENFRAVVTDFGLSKLIARDESRVLTDIRGTRGYLAPEWLLEHGISEKSDVYSYGIVLLEMIGGRRSISRVEVKETKKKKLEYFPRIVNQKMRERKIMEIVDQRLIEVNEVDEEEVMKLVCVALWCIQEKSKKRPDMTMVIEMLEG 390          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y2706_ARATH (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana GN=At2g47060 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 87/222 (39.19%), Postives = 124/222 (55.86%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIK------PGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLA-KLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            +G+C     R+L Y F  N S+   L   K      PG PVL W  R ++A+GAARGLEYLHE  NP IIHRD+K++NVLL ED  A + DF L+ +  D+     +T+V GT G+ APEY  TG+ + ++DV+ +G++LLEL+TG++ +D                     E ++   VD  L  +Y  + V  +  VA LC Q   + RP MS VV+ L+
Sbjct:  132 LGYCVDGNSRILSYEFANNGSLHDILHGRKGVKGAQPG-PVLSWYQRVKIAVGAARGLEYLHEKANPHIIHRDIKSSNVLLFEDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVD--HRLPRGQQSLVTWATPKLSEDKVKQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQ 350          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: PAM74_ARATH (Probable LRR receptor-like serine/threonine-protein kinase PAM74 OS=Arabidopsis thaliana GN=PAM74 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 79/216 (36.57%), Postives = 120/216 (55.56%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDV-RKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVVRMLE 649
            +G+C       L+Y F+    +   L   K G   ++W  R R+AL AA GLEYLH  C P I+HRD+K  N+LLDE  +A + DFGL++   +  +T+++T V GT G++ PEY  T +  E++DV+ +GI+LLE++T Q  ID SR                   K    I+D NLN +Y  + V  ++++A+ C   S  +RP MS+V   L+
Sbjct:  639 VGYCDERDHLALIYEFLPKGDLRQHLSG-KSGGSFINWGNRLRIALEAALGLEYLHSGCTPPIVHRDIKTTNILLDEQLKAKLADFGLSRSFPIGGETHISTVVAGTPGYLDPEYYQTTRLGEKSDVYSFGIVLLEIITNQPVIDQSRSKSHISQWVGFELTRGDITK----IMDPNLNGDYESRSVWRVLELAMSCANPSSVNRPNMSQVANELK 849          
BLAST of CX297760 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.997e-33
Identity = 79/233 (33.91%), Postives = 131/233 (56.22%), Query Frame = 2
Query:    5 IGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPVLDWVTRKRVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVR---GTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXXREKRLDAIVDRNLNKNYNIQEVETMIQVALLCTQASPEDRPAMSEVV----RMLEGEGLAERWEEW 682
            +G+C    ERLLVY  M N ++  +L      + VLDW TR+ + +GAA+GL +LH  C P  +H+ + +  +LLD+DF+A + D+GLAKLV  R +N ++      G +G++APEY ST  +S + DV+G+GI+LLELVTGQ+ +                        R    +DR++    + +E+   +++A  C  + P++RP M +V      M +  G++E ++E+
Sbjct:  360 LGYCVVEDERLLVYKHMVNGTLFSQLHNGGLCDAVLDWPTRRAIGVGAAKGLAWLHHGCQPPYLHQFISSNVILLDDDFDARITDYGLAKLVGSRDSNDSSFNNGDLGELGYVAPEYSSTMVASLKGDVYGFGIVLLELVTGQKPLSVINGVEGFKGSLVDWVSQYLGTGRSKDAIDRSICDKGHDEEILQFLKIACSCVVSRPKERPTMIQVYESLKNMADKHGVSEHYDEF 592          
The following BLAST results are available for this feature:
BLAST of CX297760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 316
Match NameE-valueIdentityDescription
BRL3_ARATH5.256e-3439.27Receptor-like protein kinase BRI1-like 3 OS=Arabid... [more]
APK2A_ARATH5.256e-3440.28Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
RCH2_ARATH6.864e-3439.27Receptor-like protein kinase 2 OS=Arabidopsis thal... [more]
CRK18_ARATH6.864e-3435.00Cysteine-rich receptor-like protein kinase 18 OS=A... [more]
CRK31_ARATH8.965e-3435.45Putative cysteine-rich receptor-like protein kinas... [more]
Y5596_ARATH1.529e-3336.79Probable LRR receptor-like serine/threonine-protei... [more]
Y5005_ARATH1.529e-3339.17Probable receptor-like protein kinase At5g20050 OS... [more]
Y2706_ARATH1.529e-3339.19Probable receptor-like protein kinase At2g47060 OS... [more]
PAM74_ARATH1.529e-3336.57Probable LRR receptor-like serine/threonine-protei... [more]
Y1719_ARATH1.997e-3333.91Probable inactive receptor kinase At1g27190 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC06004H11SK RindPdig24 Citrus clementina cDNA clone C06004H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297760 ID=CX297760; Name=CX297760; organism=Citrus clementina; type=EST; length=688bp
GAGGATTGGATTTTGCACAACACCTACTGAACGTCTCTTGGTGTATCCAT
TTATGCAGAACTTGAGTGTAGCCTATCGCTTACGAGAAATTAAACCTGGA
GAGCCTGTTTTGGACTGGGTTACAAGAAAACGAGTGGCATTAGGTGCAGC
ACGTGGCCTGGAATATCTTCATGAGCATTGCAATCCTAAGATCATACATC
GGGATGTGAAGGCTGCAAATGTATTACTGGATGAAGATTTTGAAGCAGTT
GTTGGTGACTTTGGATTGGCAAAATTGGTGGACGTGAGAAAGACTAATGT
GACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCTGAGTACTTGT
CCACTGGGAAATCATCAGAAAGGACAGATGTTTTTGGTTATGGGATTATG
CTTCTGGAGCTTGTAACAGGTCAAAGGGCAATTGACTTTTCACGTTTGGA
AGAAGAAGATGATGTCCTATTGCTTGACCATGTCAAGAAGCTAGAGAGAG
AGAAAAGGTTGGATGCTATTGTAGATCGCAACCTTAATAAGAATTACAAC
ATCCAAGAGGTGGAGACAATGATTCAAGTTGCACTGCTCTGCACACAAGC
ATCACCAGAGGACCGTCCAGCAATGTCAGAGGTGGTGCGGATGTTGGAAG
GAGAGGGTCTAGCTGAGAGGTGGGAAGAGTGGCAGCAT
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