CX297861

Overview
NameCX297861
Unique NameCX297861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: HIPK4_HUMAN (Homeodomain-interacting protein kinase 4 OS=Homo sapiens GN=HIPK4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 61/200 (30.50%), Postives = 98/200 (49.00%), Query Frame = 1
Query:   97 TSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYI----VSTRHYRA 684
            T  Y I+  +G+GTFG+V     R TGE VAIK++++          E+ +L  ++  D   +  ++   +F       +VFE+L  +L++F ++NN+ P P   +R +  Q+L  +A + +L +IH DLKPENI+ V              R P              +KVIDFGS +    E  Y+    + +R YRA
Sbjct:    8 TDCYDIIEVLGKGTFGEVAKGWRRSTGEMVAIKILKNDAYRNRIIKNELKLLHCMRGLDPEEAHVIRFLEFFHDALKFYLVFELLEQNLFEFQKENNFAPLPARHIRTVTLQVLTALARLKELAIIHADLKPENIMLVD-----------QTRCP------------FRVKVIDFGSASI-FSEVRYVKEPYIQSRFYRA 183          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: HIPK4_RAT (Homeodomain-interacting protein kinase 4 OS=Rattus norvegicus GN=Hipk4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 61/200 (30.50%), Postives = 98/200 (49.00%), Query Frame = 1
Query:   97 TSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYI----VSTRHYRA 684
            T  Y I+  +G+GTFG+V     R TGE VAIK++++          E+ +L  ++  D   +  ++   +F       +VFE+L  +L++F ++NN+ P P   +R +  Q+L  +A + +L +IH DLKPENI+ V              R P              +KVIDFGS +    E  Y+    + +R YRA
Sbjct:    8 TDCYDIIEVLGKGTFGEVAKGWRRSTGEMVAIKILKNDAYRSRIIKNELKLLRCVRGLDPDEAHVIRFLEFFHDALKFYLVFELLEQNLFEFQKENNFAPLPARHIRTVTLQVLRALARLKELAIIHADLKPENIMLVD-----------QTRCP------------FRVKVIDFGSASI-FSEVRYVKEPYIQSRFYRA 183          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: HIPK4_MOUSE (Homeodomain-interacting protein kinase 4 OS=Mus musculus GN=Hipk4 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 61/200 (30.50%), Postives = 98/200 (49.00%), Query Frame = 1
Query:   97 TSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYYKRLPKSSAIKVIDFGSTAYEHQEHNYI----VSTRHYRA 684
            T  Y I+  +G+GTFG+V     R TGE VAIK++++          E+ +L  ++  D   +  ++   +F       +VFE+L  +L++F ++NN+ P P   +R +  Q+L  +A + +L +IH DLKPENI+ V              R P              +KVIDFGS +    E  Y+    + +R YRA
Sbjct:    8 TDCYDIIEVLGKGTFGEVAKGWRRSTGEMVAIKILKNDAYRSRIIKNELKLLRCVRGLDPDEAHVIRFLEFFHDALKFYLVFELLEQNLFEFQKENNFAPLPARHIRTVTLQVLRALARLKELAIIHADLKPENIMLVD-----------QTRCP------------FRVKVIDFGSASI-FSEVRYVKEPYIQSRFYRA 183          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: SKY1_DICDI (Probable serine/threonine-protein kinase sky1 OS=Dictyostelium discoideum GN=sky1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 56/187 (29.95%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  100 SRYKILRKIGEGTFGQVLDCLDRETGET---------------------------------VAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRN----HICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMH-DLRLIHTDLKPENIL-------FVSPEYL 525
            +RY+++ K+G G F  V  C D++T  T                                 VA+K+VRS + Y E A  EI +L  + +Y+       ++ + F +R     H C+VFE+LG +L D ++ + YR  P+ LV+ + +Q L  + ++H   ++IHTDLKPEN+L       F S +Y+
Sbjct:  133 NRYQVVDKLGWGHFSTVWLCNDKDTPITTSSSSSSTTTTTTSSSSNGNGNGNGGNVIGYKQVALKIVRSARTYSETAEDEIKILNAISKYNAQDKCVARLLDHFTHRGPNGRHYCMVFELLGNNLLDLIKHHRYRGMPITLVKTLMKQTLIALDYIHTKCKIIHTDLKPENVLLEKSFDFFTSNDYI 319          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: MAK_RAT (Serine/threonine-protein kinase MAK OS=Rattus norvegicus GN=Mak PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 47/147 (31.97%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  100 SRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDY 540
            +RY  +R++G+GT+G VL     E+GE VAIK ++  K Y       +  ++ LK+ + +    ++++      +H+  +FE +  +LY  ++  N + FP  ++R I  Q+L+ +AF+H     H D+KPEN+L + PE +KI D+
Sbjct:    2 NRYTTMRQLGDGTYGSVLMGKSNESGELVAIKRMKR-KFYSWDECMNLREVKSLKKLNHAN--VIKLKEVIRENDHLYFIFEYMKENLYQLMKDRN-KLFPESVIRNIMYQILQGLAFIHKHGFFHRDMKPENLLCMGPELVKIADF 144          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: MAK_HUMAN (Serine/threonine-protein kinase MAK OS=Homo sapiens GN=MAK PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 47/147 (31.97%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  100 SRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDY 540
            +RY  +R++G+GT+G VL     E+GE VAIK ++  K Y       +  ++ LK+ + +    ++++      +H+  +FE +  +LY  ++  N + FP  ++R I  Q+L+ +AF+H     H D+KPEN+L + PE +KI D+
Sbjct:    2 NRYTTMRQLGDGTYGSVLMGKSNESGELVAIKRMKR-KFYSWDECMNLREVKSLKKLNHAN--VIKLKEVIRENDHLYFIFEYMKENLYQLMKDRN-KLFPESVIRNIMYQILQGLAFIHKHGFFHRDMKPENLLCMGPELVKIADF 144          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: ICK_HUMAN (Serine/threonine-protein kinase ICK OS=Homo sapiens GN=ICK PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 48/147 (32.65%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  100 SRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDY 540
            +RY  +R++G+GT+G VL     E+GE +AIK ++  K Y       +  ++ LK+ + +    V+++      +H+  +FE +  +LY  +++ N + FP   +R I  Q+L+ +AF+H     H DLKPEN+L + PE +KI D+
Sbjct:    2 NRYTTIRQLGDGTYGSVLLGRSIESGELIAIKKMKR-KFYSWEECMNLREVKSLKKLNHAN--VVKLKEVIRENDHLYFIFEYMKENLYQLIKERN-KLFPESAIRNIMYQILQGLAFIHKHGFFHRDLKPENLLCMGPELVKIADF 144          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: MAK_MOUSE (Serine/threonine-protein kinase MAK OS=Mus musculus GN=Mak PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 47/147 (31.97%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  100 SRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDY 540
            +RY  ++++G+GT+G VL     E+GE VAIK ++  K Y       +  ++ LK+ + +    ++++      +H+  VFE +  +LY  ++  N + FP  ++R I  Q+L+ +AF+H     H D+KPEN+L + PE +KI D+
Sbjct:    2 NRYTTMKQLGDGTYGSVLMGKSNESGELVAIKRMKR-KFYSWDECMNLREVKSLKKLNHAN--VIKLKEVIRENDHLYFVFEYMKENLYQLMKDRN-KLFPESVIRNIMYQILQGLAFIHKHGFFHRDMKPENLLCMGPELVKIADF 144          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: ICK_RAT (Serine/threonine-protein kinase ICK OS=Rattus norvegicus GN=Ick PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 47/147 (31.97%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  100 SRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDY 540
            +RY  ++++G+GT+G VL     E+GE +AIK ++  K Y       +  ++ LK+ + +    V+++      +H+  +FE +  +LY  +++ N + FP   +R I  Q+L+ +AF+H     H DLKPEN+L + PE +KI D+
Sbjct:    2 NRYTTIKQLGDGTYGSVLLGRSIESGELIAIKKMKR-KFYSWEECMNLREVKSLKKLNHAN--IVKLKEVIRENDHLYFIFEYMKENLYQLIKERN-KLFPESAIRNIMYQILQGLAFIHKHGFFHRDLKPENLLCMGPELVKIADF 144          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: ICK_MOUSE (Serine/threonine-protein kinase ICK OS=Mus musculus GN=Ick PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 47/147 (31.97%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  100 SRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDY 540
            +RY  ++++G+GT+G VL     E+GE +AIK ++  K Y       +  ++ LK+ + +    V+++      +H+  +FE +  +LY  +++ N + FP   +R I  Q+L+ +AF+H     H DLKPEN+L + PE +KI D+
Sbjct:    2 NRYTTIKQLGDGTYGSVLLGRSIESGELIAIKKMKR-KFYSWEECMNLREVKSLKKLNHAN--IVKLKEVIRENDHLYFIFEYMKENLYQLIKERN-KLFPESAIRNIMYQILQGLAFIHKHGFFHRDLKPENLLCMGPELVKIADF 144          
The following BLAST results are available for this feature:
BLAST of CX297861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
HIPK4_HUMAN6.183e-1930.50Homeodomain-interacting protein kinase 4 OS=Homo s... [more]
HIPK4_RAT8.076e-1930.50Homeodomain-interacting protein kinase 4 OS=Rattus... [more]
HIPK4_MOUSE8.076e-1930.50Homeodomain-interacting protein kinase 4 OS=Mus mu... [more]
SKY1_DICDI2.598e-1729.95Probable serine/threonine-protein kinase sky1 OS=D... [more]
MAK_RAT2.872e-1631.97Serine/threonine-protein kinase MAK OS=Rattus norv... [more]
MAK_HUMAN2.872e-1631.97Serine/threonine-protein kinase MAK OS=Homo sapien... [more]
ICK_HUMAN2.872e-1632.65Serine/threonine-protein kinase ICK OS=Homo sapien... [more]
MAK_MOUSE4.899e-1631.97Serine/threonine-protein kinase MAK OS=Mus musculu... [more]
ICK_RAT6.399e-1631.97Serine/threonine-protein kinase ICK OS=Rattus norv... [more]
ICK_MOUSE6.399e-1631.97Serine/threonine-protein kinase ICK OS=Mus musculu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06006A06SK RindPdig24 Citrus clementina cDNA clone C06006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297861 ID=CX297861; Name=CX297861; organism=Citrus clementina; type=EST; length=684bp
GAGGTGTTTGTAAAGGGATTGGCTCAAAATGGCACTCCCCAATGGCGAAA
TGATGACAAAGATGGACATTACCTGTTTGCGCTTGGAGAGAATTTAACTT
CTCGCTATAAAATCCTCAGAAAAATTGGTGAAGGAACTTTTGGTCAGGTT
TTGGATTGTTTAGATAGGGAAACAGGAGAGACGGTTGCCATAAAAGTTGT
GCGAAGTATTAAGAAATACCGTGAAGCAGCAATGACAGAAATTGATGTGC
TTGAGTTGCTCAAAAGATATGACAGAAGTGGCAGTCGTTGTGTTCAAATA
AGGAACTGGTTTGACTATCGTAACCATATCTGTATCGTGTTTGAGATGCT
TGGACCTAGCCTATACGATTTTCTTCGGAAAAATAATTATCGCCCATTTC
CGGTTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCA
TTCATGCATGATTTGCGCCTCATCCATACCGACTTGAAGCCTGAGAATAT
ACTTTTTGTTTCTCCGGAATACTTGAAAATACCTGACTACAAGGTTACGG
CCCGATCACCAACTGATGTGAACTATTACAAGAGGTTGCCAAAGTCAAGT
GCTATTAAGGTTATTGATTTTGGAAGCACAGCATATGAGCATCAAGAACA
CAACTATATTGTCTCCACCAGGCACTACCGTGCT
back to top