CX297861

Overview
NameCX297861
Unique NameCX297861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CDK2_XENLA (Cell division protein kinase 2 OS=Xenopus laevis GN=cdk2 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 50/145 (34.48%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  106 YKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDY 540
            ++ + KIGEGT+G V    +RETGE VA+K +R   +      T I  + LLK  +      V++ +     N + +VFE L   L  F+  +N     + LV+    QLL+ +AF H  R++H DLKP+N+L  S   +K+ D+
Sbjct:    4 FQKVEKIGEGTYGVVYKARNRETGEIVALKKIRLDTETEGVPSTAIREISLLKELNHPN--IVKLLDVIHTENKLYLVFEFLNQDLKKFMDGSNISGISLALVKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINSDGAIKLADF 146          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: SKY1_YEAST (Serine/threonine-protein kinase SKY1 OS=Saccharomyces cerevisiae GN=SKY1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 50/146 (34.25%), Postives = 84/146 (57.53%), Query Frame = 1
Query:  100 SRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRS------GSRCVQIRNWFDYRN----HICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMH-DLRLIHTDLKPENIL 504
            +RY ++RK+G G F  V    D      VA+K+VR  K Y EAA  EI +L+ +   D +       +  +++ + F+++     H+ +VFE+LG +L   ++K  +R  P+  V++I +QLL  + +MH    +IHTD+KPEN+L
Sbjct:  156 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVL 301          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: PRP4B_RAT (Serine/threonine-protein kinase PRP4 homolog OS=Rattus norvegicus GN=Prpf4b PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 54/200 (27.00%), Postives = 98/200 (49.00%), Query Frame = 1
Query:   55 DKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDR-ETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-RCVQIRNWFDYRNHICIVFEMLGPSLYDFLRK-NNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILF-VSPEYLKIPDYKVTAR------SPTDVNYYKRLPKSSAIKVIDFG 624
            D +G+Y   +GE L  RY +    G+G F  V+   D     + VA+K++R+ +  ++  + E++ L+ L   D      C+++   F ++ H+C+VFE L  +L + L+K        +  VR   +QL   +  +    ++H D+KP+NIL   S   LK+ D+   +       +P  V+ + R P+    K  D+G
Sbjct:  670 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYG 869          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: PRP4B_PONAB (Serine/threonine-protein kinase PRP4 homolog OS=Pongo abelii GN=PRPF4B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 54/200 (27.00%), Postives = 98/200 (49.00%), Query Frame = 1
Query:   55 DKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDR-ETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-RCVQIRNWFDYRNHICIVFEMLGPSLYDFLRK-NNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILF-VSPEYLKIPDYKVTAR------SPTDVNYYKRLPKSSAIKVIDFG 624
            D +G+Y   +GE L  RY +    G+G F  V+   D     + VA+K++R+ +  ++  + E++ L+ L   D      C+++   F ++ H+C+VFE L  +L + L+K        +  VR   +QL   +  +    ++H D+KP+NIL   S   LK+ D+   +       +P  V+ + R P+    K  D+G
Sbjct:  670 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARASQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYG 869          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: PRP4B_MOUSE (Serine/threonine-protein kinase PRP4 homolog OS=Mus musculus GN=Prpf4b PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 54/200 (27.00%), Postives = 98/200 (49.00%), Query Frame = 1
Query:   55 DKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDR-ETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-RCVQIRNWFDYRNHICIVFEMLGPSLYDFLRK-NNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILF-VSPEYLKIPDYKVTAR------SPTDVNYYKRLPKSSAIKVIDFG 624
            D +G+Y   +GE L  RY +    G+G F  V+   D     + VA+K++R+ +  ++  + E++ L+ L   D      C+++   F ++ H+C+VFE L  +L + L+K        +  VR   +QL   +  +    ++H D+KP+NIL   S   LK+ D+   +       +P  V+ + R P+    K  D+G
Sbjct:  670 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYG 869          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: PRP4B_HUMAN (Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens GN=PRPF4B PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 54/200 (27.00%), Postives = 98/200 (49.00%), Query Frame = 1
Query:   55 DKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDR-ETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-RCVQIRNWFDYRNHICIVFEMLGPSLYDFLRK-NNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILF-VSPEYLKIPDYKVTAR------SPTDVNYYKRLPKSSAIKVIDFG 624
            D +G+Y   +GE L  RY +    G+G F  V+   D     + VA+K++R+ +  ++  + E++ L+ L   D      C+++   F ++ H+C+VFE L  +L + L+K        +  VR   +QL   +  +    ++H D+KP+NIL   S   LK+ D+   +       +P  V+ + R P+    K  D+G
Sbjct:  670 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYG 869          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: PRP4B_BOVIN (Serine/threonine-protein kinase PRP4 homolog OS=Bos taurus GN=PRPF4B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 54/200 (27.00%), Postives = 98/200 (49.00%), Query Frame = 1
Query:   55 DKDGHYLFALGENLTSRYKILRKIGEGTFGQVLDCLDR-ETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGS-RCVQIRNWFDYRNHICIVFEMLGPSLYDFLRK-NNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILF-VSPEYLKIPDYKVTAR------SPTDVNYYKRLPKSSAIKVIDFG 624
            D +G+Y   +GE L  RY +    G+G F  V+   D     + VA+K++R+ +  ++  + E++ L+ L   D      C+++   F ++ H+C+VFE L  +L + L+K        +  VR   +QL   +  +    ++H D+KP+NIL   S   LK+ D+   +       +P  V+ + R P+    K  D+G
Sbjct:  671 DAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYG 870          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CDK2_CARAU (Cell division protein kinase 2 OS=Carassius auratus GN=cdk2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  106 YKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYY 579
            ++ + KIGEGT+G V    ++ TGETVA+K +R   +      T I  + LLK  +      V++ +     N + +VFE L   L  F+  +      + LV+    QLL+ +AF H  R++H DLKP+N+L  +   +K+ D+ +       V  Y
Sbjct:    4 FQKVEKIGEGTYGVVYKAKNKVTGETVALKKIRLDTETEGVPSTAIREISLLKELNHPN--IVKLHDVIHTENKLYLVFEFLHQDLKRFMDSSTVTGISLPLVKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAQGEIKLADFGLARAFGVPVRTY 159          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSJ (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 51/155 (32.90%), Postives = 84/155 (54.19%), Query Frame = 1
Query:   88 ENLTSRYKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYRE----AAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDY 540
            + +  RY     +GEGT+G V   +D +TG TVAIK +R + KY+E     A+ EI +L+ LK      S  +++ + F Y+ ++ +VFE +   L   +R  N    P D    I + +L+ +AF H   ++H D+KP N+L  +   LK+ D+
Sbjct:   13 KRVADRYLKREVLGEGTYGVVFKAVDTKTGNTVAIKKIR-LGKYKEGVNFTALREIKLLKELK-----DSNIIELIDAFPYKGNLHLVFEFMETDLEAVIRDRNIVLSPADTKSYI-QMMLKGLAFCHKKWVLHRDMKPNNLLIGADGQLKLADF 160          
BLAST of CX297861 vs. ExPASy Swiss-Prot
Match: CDK2_MESAU (Cell division protein kinase 2 OS=Mesocricetus auratus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 48/158 (30.38%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  106 YKILRKIGEGTFGQVLDCLDRETGETVAIKVVRSIKKYREAAMTEIDVLELLKRYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVREIGRQLLECVAFMHDLRLIHTDLKPENILFVSPEYLKIPDYKVTARSPTDVNYY 579
            ++ + KIGEGT+G V    ++ TGE VA+K +R   +      T I  + LLK  +      V++ +     N + +VFE+L   L  F+  +     P+ L++    QLL+ +AF H  R++H DLKP+N+L  +   +K+ D+ +       V  Y
Sbjct:    4 FQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN--IVKLLDVIHTENKLYLVFELLHQDLKKFMDASAVTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAEGSIKLADFGLARAFGVPVRTY 159          
The following BLAST results are available for this feature:
BLAST of CX297861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
CDK2_XENLA1.425e-1534.48Cell division protein kinase 2 OS=Xenopus laevis G... [more]
SKY1_YEAST2.432e-1534.25Serine/threonine-protein kinase SKY1 OS=Saccharomy... [more]
PRP4B_RAT7.075e-1527.00Serine/threonine-protein kinase PRP4 homolog OS=Ra... [more]
PRP4B_PONAB7.075e-1527.00Serine/threonine-protein kinase PRP4 homolog OS=Po... [more]
PRP4B_MOUSE7.075e-1527.00Serine/threonine-protein kinase PRP4 homolog OS=Mu... [more]
PRP4B_HUMAN7.075e-1527.00Serine/threonine-protein kinase PRP4 homolog OS=Ho... [more]
PRP4B_BOVIN7.075e-1527.00Serine/threonine-protein kinase PRP4 homolog OS=Bo... [more]
CDK2_CARAU2.058e-1431.01Cell division protein kinase 2 OS=Carassius auratu... [more]
CDKD1_ORYSJ2.688e-1432.90Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDK2_MESAU2.688e-1430.38Cell division protein kinase 2 OS=Mesocricetus aur... [more]

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Properties
Property NameValue
Genbank descriptionC06006A06SK RindPdig24 Citrus clementina cDNA clone C06006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297861 ID=CX297861; Name=CX297861; organism=Citrus clementina; type=EST; length=684bp
GAGGTGTTTGTAAAGGGATTGGCTCAAAATGGCACTCCCCAATGGCGAAA
TGATGACAAAGATGGACATTACCTGTTTGCGCTTGGAGAGAATTTAACTT
CTCGCTATAAAATCCTCAGAAAAATTGGTGAAGGAACTTTTGGTCAGGTT
TTGGATTGTTTAGATAGGGAAACAGGAGAGACGGTTGCCATAAAAGTTGT
GCGAAGTATTAAGAAATACCGTGAAGCAGCAATGACAGAAATTGATGTGC
TTGAGTTGCTCAAAAGATATGACAGAAGTGGCAGTCGTTGTGTTCAAATA
AGGAACTGGTTTGACTATCGTAACCATATCTGTATCGTGTTTGAGATGCT
TGGACCTAGCCTATACGATTTTCTTCGGAAAAATAATTATCGCCCATTTC
CGGTTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCA
TTCATGCATGATTTGCGCCTCATCCATACCGACTTGAAGCCTGAGAATAT
ACTTTTTGTTTCTCCGGAATACTTGAAAATACCTGACTACAAGGTTACGG
CCCGATCACCAACTGATGTGAACTATTACAAGAGGTTGCCAAAGTCAAGT
GCTATTAAGGTTATTGATTTTGGAAGCACAGCATATGAGCATCAAGAACA
CAACTATATTGTCTCCACCAGGCACTACCGTGCT
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