CX297863

Overview
NameCX297863
Unique NameCX297863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL5_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL5 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.983e-32
Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            VE+GNP IPNRI ECRSYPLYRLVR+E+GT  LTGEKV SPGE+ DKVFTA C G+IIDP+LECL+ WNGAP+PIC
Sbjct:  646 VESGNPAIPNRITECRSYPLYRLVRQEVGTELLTGEKVRSPGEEIDKVFTAFCNGQIIDPLLECLKSWNGAPIPIC 721          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL3_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.983e-32
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 3
Query:   18 TVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            ++ENGNP I NRIKECRSYPLYR VREELG   LTGEKV SPGE+ DKVFTAMC G+IID +LECL+EWNGAPLPIC
Sbjct:  636 SLENGNPAIANRIKECRSYPLYRFVREELGAELLTGEKVRSPGEECDKVFTAMCNGQIIDSLLECLKEWNGAPLPIC 712          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 9.983e-32
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            E+G   IPN+IKECRSYPLY+ VREELGT  LTGEKV SPGE+FDK+FTA+CQGKIIDP+LECL EWNGAPLPIC
Sbjct:  432 ESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 506          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.304e-31
Identity = 61/75 (81.33%), Postives = 67/75 (89.33%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            ++GN  I N+IKECRSYPLY+ VREELGT  LTGEKV SPGE+FDKVFTAMCQGKIIDPMLECL EWNG+PLPIC
Sbjct:  641 DSGNSAIDNKIKECRSYPLYKFVREELGTVLLTGEKVQSPGEEFDKVFTAMCQGKIIDPMLECLGEWNGSPLPIC 715          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=PAL PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.304e-31
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            VE+GNP IPNRIKECRSYPLY+ VRE LGT  LTGEKV SPGE+ DKVFTAMC+G IIDP+LECL+ W+GAPLPIC
Sbjct:  632 VESGNPAIPNRIKECRSYPLYKFVREGLGTELLTGEKVRSPGEECDKVFTAMCEGSIIDPLLECLKSWDGAPLPIC 707          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.224e-31
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            ENG   IPN+IKECRSYPLY+ VREELGT  LTGEKV SPGE+ DK+FTAMCQGKIIDP+LEC+ EWNGAPLP+C
Sbjct:  641 ENGQSAIPNKIKECRSYPLYKFVREELGTEMLTGEKVRSPGEECDKLFTAMCQGKIIDPLLECIGEWNGAPLPLC 715          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_SOLTU (Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum GN=PAL-1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.224e-31
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +E+GNP+IPNRI ECRSYPLYRLVR+ELGT  LTGEKV SPGE+ +KVFTAMC G+I DP+LECL+ WNGAPLPIC
Sbjct:  645 LESGNPSIPNRITECRSYPLYRLVRQELGTELLTGEKVRSPGEEIEKVFTAMCNGQINDPLLECLKSWNGAPLPIC 720          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_DAUCA (Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=PAL1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.224e-31
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPI 245
            VE+GNP IPNRIKECRSYPLY+ +REELGT +LTGEKVTSPGE+FDKVFTAM +G+IIDP+L CL  WNGAPLPI
Sbjct:  633 VESGNPAIPNRIKECRSYPLYKFIREELGTVYLTGEKVTSPGEEFDKVFTAMSKGEIIDPLLACLESWNGAPLPI 707          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.905e-31
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 3
Query:    6 GRGQTVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            G    +ENGNP IPNRI ECRSYPLY+ VREELGT  LTGEKV SPGE  DKVFTA+C G IIDP+LECL+ W+GAPLPIC
Sbjct:  628 GARSAIENGNPAIPNRITECRSYPLYKFVREELGTEMLTGEKVKSPGEVCDKVFTAVCDGGIIDPLLECLKSWDGAPLPIC 708          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL2_CICAR (Phenylalanine ammonia-lyase 2 OS=Cicer arietinum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.793e-31
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            VENGNP +PNRI ECRSYPLY+ VRE LGT+ LTGEK+ SPGE+ DKVF A+C G+ IDPML+CL+EWNGAPLPIC
Sbjct:  643 VENGNPAVPNRIIECRSYPLYKFVRENLGTSLLTGEKIRSPGEECDKVFAALCDGRFIDPMLDCLKEWNGAPLPIC 718          
The following BLAST results are available for this feature:
BLAST of CX297863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PAL5_SOLLC9.983e-3277.63Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL3_TOBAC9.983e-3279.22Phenylalanine ammonia-lyase OS=Nicotiana tabacum P... [more]
PAL1_PHAVU9.983e-3280.00Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]
PALY_POPTR1.304e-3181.33Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PAL1_IPOBA1.304e-3178.95Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=... [more]
PALY_STYHU2.224e-3178.67Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]
PAL1_SOLTU2.224e-3177.63Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... [more]
PAL1_DAUCA2.224e-3180.00Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=... [more]
PAL2_IPOBA2.905e-3174.07Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]
PAL2_CICAR3.793e-3175.00Phenylalanine ammonia-lyase 2 OS=Cicer arietinum G... [more]

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Properties
Property NameValue
Genbank descriptionC06006A08SK RindPdig24 Citrus clementina cDNA clone C06006A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297863 ID=CX297863; Name=CX297863; organism=Citrus clementina; type=EST; length=419bp
GATTCGGCCGAGGGCAGACTGTTGAGAATGGAAATCCAACAATTCCCAAC
AGGATCAAAGAATGCAGGTCTTACCCATTGTACAGGTTAGTGAGGGAGGA
GCTCGGGACTAATTTTCTGACTGGGGAAAAAGTTACATCGCCCGGCGAGA
AATTTGACAAAGTGTTTACAGCAATGTGCCAGGGCAAGATCATTGATCCA
ATGCTGGAATGTCTCAGGGAATGGAATGGCGCCCCTCTTCCAATATGCTA
GTTGTTTTATTCTTAAGAATTCATTGAATTGCCGATGTGACTAAATGGTA
CAAATTAGTCCACCTGTAATGTTTCAATTCCTTGTATTTGTTGTTGAATA
TCAAGAAATCCGACTGGGTATCTCATTTTTTTTCCTCNNAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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