CX297863

Overview
NameCX297863
Unique NameCX297863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_PEA (Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.344e-30
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPI 245
            E+GNPT+PN+I  CRSYPLYR VR+ELGT  LTGEKV SPGE+ DK+FTA+CQGKIIDP+L+CL +WNGAPLPI
Sbjct:  649 ESGNPTVPNKINGCRSYPLYRFVRQELGTGLLTGEKVISPGEECDKLFTAICQGKIIDPLLQCLGDWNGAPLPI 722          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PALY_BROFI (Phenylalanine ammonia-lyase OS=Bromheadia finlaysoniana GN=PAL PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.082e-29
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            ENG+P I NRIK+CRSYPLY+ V+E +G+ FLTGEKV SPGE+FDKVF A+C+GK IDPML+CL+EWNGAPLPIC
Sbjct:  630 ENGSPAIENRIKDCRSYPLYKFVKE-VGSGFLTGEKVVSPGEEFDKVFNAICEGKAIDPMLDCLKEWNGAPLPIC 703          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.082e-29
Identity = 54/77 (70.13%), Postives = 65/77 (84.42%), Query Frame = 3
Query:   18 TVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +VENG P IPN+I+ECRSYPLY+ VR ELGT  LTGEKV SPGE+ D+VF A+C+GK++DP+L CL  WNGAPLPIC
Sbjct:  629 SVENGTPAIPNKIEECRSYPLYKFVRGELGTELLTGEKVRSPGEELDQVFNALCEGKLVDPLLACLEAWNGAPLPIC 705          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.082e-29
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPI 245
            +ENG   IPNRIKECRSYPLYR VREELGT+ LTGEK+ SPGE+  KVF A+C GK++DP+LECL+EWNGAPLPI
Sbjct:  635 IENGKSEIPNRIKECRSYPLYRFVREELGTSLLTGEKIKSPGEECYKVFNAICAGKLVDPLLECLKEWNGAPLPI 709          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.637e-29
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   24 ENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPI 245
            ENGNP  PNRIKECRSYPLY+ VREELG   LTGEK  SP E+F+KV+TAMCQ KIIDP+LECL +WNG P+PI
Sbjct:  637 ENGNPATPNRIKECRSYPLYKFVREELGIRLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLEDWNGVPIPI 710          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PALY_MALDO (Phenylalanine ammonia-lyase (Fragment) OS=Malus domestica GN=PAL PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.056e-29
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +E GN  +PNRI ECRSYPLY+ VREELG  +LTGEKV SPGE+ DKVF A+CQGKIIDP+L CL  WNGAPLPIC
Sbjct:  160 IEGGNAAVPNRIAECRSYPLYKFVREELGGEYLTGEKVRSPGEECDKVFQAICQGKIIDPILGCLEGWNGAPLPIC 235          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.033e-28
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +E+G P I NRI ECRSYPLY+ +REELGTNFLTGEKV SPGE+ D+VFTAM +G I+DP+L+CL  WNGAPLPIC
Sbjct:  638 LEDGKPAIANRITECRSYPLYKFIREELGTNFLTGEKVMSPGEECDRVFTAMSKGLIVDPLLKCLEGWNGAPLPIC 713          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL1_PRUAV (Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.033e-28
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +++G+  +PNRI ECRSYPLY+ VREELG  +LTGEKV SPGE+ DKVFTA+C+GKIIDP+L+CL  WNGAPLPIC
Sbjct:  642 LDSGSAGVPNRITECRSYPLYKFVREELGAEYLTGEKVRSPGEECDKVFTAICEGKIIDPILDCLEGWNGAPLPIC 717          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.301e-28
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            +ENGNP IPNRI + RSYPLY+ VREELGT  LTGEKV SPGE+FDKVFTA+C GK+IDP    L+EWNGAPLP+C
Sbjct:  496 LENGNPAIPNRITDRRSYPLYKFVREELGTVLLTGEKVGSPGEEFDKVFTAICAGKLIDPCWSVLKEWNGAPLPLC 571          
BLAST of CX297863 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 3
Query:   21 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 248
            VENG   IP+RI ECRSYPLYR VREELGT +LTGEK  SPGE+ +KV  A+ +GK IDP+LECL+EWNG PLPIC
Sbjct:  638 VENGTAAIPSRITECRSYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNGEPLPIC 713          
The following BLAST results are available for this feature:
BLAST of CX297863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PAL1_PEA9.344e-3075.68Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=... [more]
PALY_BROFI2.082e-2974.67Phenylalanine ammonia-lyase OS=Bromheadia finlayso... [more]
PAL2_LITER2.082e-2970.13Phenylalanine ammonia-lyase 2 OS=Lithospermum eryt... [more]
PAL1_RUBID2.082e-2974.67Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]
PAL3_PHAVU4.637e-2974.32Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PALY_MALDO6.056e-2973.68Phenylalanine ammonia-lyase (Fragment) OS=Malus do... [more]
PALY_DIGLA1.033e-2872.37Phenylalanine ammonia-lyase OS=Digitalis lanata PE... [more]
PAL1_PRUAV1.033e-2871.05Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=P... [more]
PAL4_POPKI2.301e-2873.68Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]
PAL2_ORYSJ3.323e-2771.05Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC06006A08SK RindPdig24 Citrus clementina cDNA clone C06006A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297863 ID=CX297863; Name=CX297863; organism=Citrus clementina; type=EST; length=419bp
GATTCGGCCGAGGGCAGACTGTTGAGAATGGAAATCCAACAATTCCCAAC
AGGATCAAAGAATGCAGGTCTTACCCATTGTACAGGTTAGTGAGGGAGGA
GCTCGGGACTAATTTTCTGACTGGGGAAAAAGTTACATCGCCCGGCGAGA
AATTTGACAAAGTGTTTACAGCAATGTGCCAGGGCAAGATCATTGATCCA
ATGCTGGAATGTCTCAGGGAATGGAATGGCGCCCCTCTTCCAATATGCTA
GTTGTTTTATTCTTAAGAATTCATTGAATTGCCGATGTGACTAAATGGTA
CAAATTAGTCCACCTGTAATGTTTCAATTCCTTGTATTTGTTGTTGAATA
TCAAGAAATCCGACTGGGTATCTCATTTTTTTTCCTCNNAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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