CX297877

Overview
NameCX297877
Unique NameCX297877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_SALTY (Ribose-phosphate pyrophosphokinase OS=Salmonella typhimurium GN=prs PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 64/209 (30.62%), Postives = 99/209 (47.37%), Query Frame = 3
Query:   27 TAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFH---KQLQHFPMIVCNKVRD-GNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQ 641
            TA  +A  LS++   R     ++T D+HA Q + +F   +   F S  P+LL  + QL + DN  +  PD G   R     K L    M + +K R   N   V    GD  GR  V+VDD++ +GGTL +  + L   GA ++ AY TH IF   +             S +    + D+ P+T  E+ + P    L+L+G +A A++
Sbjct:  109 TAKVVADFLSSVGVDR-----VLTVDLHAEQIQGFFDVPVDNVFGS--PILLEDMLQL-NLDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLR-------NSVIDEVVVCDTIPLT-DEIKALPNVRTLTLSGMLAEAIR 301          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_SALTI (Ribose-phosphate pyrophosphokinase OS=Salmonella typhi GN=prs PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 64/209 (30.62%), Postives = 99/209 (47.37%), Query Frame = 3
Query:   27 TAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFH---KQLQHFPMIVCNKVRD-GNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQ 641
            TA  +A  LS++   R     ++T D+HA Q + +F   +   F S  P+LL  + QL + DN  +  PD G   R     K L    M + +K R   N   V    GD  GR  V+VDD++ +GGTL +  + L   GA ++ AY TH IF   +             S +    + D+ P+T  E+ + P    L+L+G +A A++
Sbjct:  109 TAKVVADFLSSVGVDR-----VLTVDLHAEQIQGFFDVPVDNVFGS--PILLEDMLQL-NLDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLR-------NSVIDEVVVCDTIPLT-DEIKALPNVRTLTLSGMLAEAIR 301          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_CAUCR (Ribose-phosphate pyrophosphokinase OS=Caulobacter crescentus GN=prs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 60/207 (28.99%), Postives = 97/207 (46.86%), Query Frame = 3
Query:   42 ARILSNIPTSRGGPTSLVTFDIHALQERFYFG---DTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFH---KQLQHFPMIVCNKVRDG-NQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQ 641
            A++++N+ T R G   ++T D+HA Q + +F    D +LP    A  +     +  P  D++ +  PD G   R     K+L    + + +K R G  Q  V    GD + R  ++ DD+  S GTL    + L AHGA  +SAY+THG+   A+ +R          S LT   ++DS   +     + P    +S A  I  A++
Sbjct:  106 AKLVANLIT-RSGADRVLTMDLHAGQIQGFFDIPTDNLLPSRLMAEDIR----RHYPMGDDLMVVSPDVGGVVRARALAKRLDDADLAIVDKRRSGPGQSEVMNIIGDVKDRRCILFDDIADSAGTLCNAAQALMAHGAKSVSAYITHGVLSGAAADRV-------ANSVLTELVVTDSIEAS-DPAKACPKIRYVSCAPLIGEAIR 299          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_CAUCN (Ribose-phosphate pyrophosphokinase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=prs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 60/207 (28.99%), Postives = 97/207 (46.86%), Query Frame = 3
Query:   42 ARILSNIPTSRGGPTSLVTFDIHALQERFYFG---DTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFH---KQLQHFPMIVCNKVRDG-NQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQ 641
            A++++N+ T R G   ++T D+HA Q + +F    D +LP    A  +     +  P  D++ +  PD G   R     K+L    + + +K R G  Q  V    GD + R  ++ DD+  S GTL    + L AHGA  +SAY+THG+   A+ +R          S LT   ++DS   +     + P    +S A  I  A++
Sbjct:  106 AKLVANLIT-RSGADRVLTMDLHAGQIQGFFDIPTDNLLPSRLMAEDIR----RHYPMGDDLMVVSPDVGGVVRARALAKRLDDADLAIVDKRRSGPGQSEVMNIIGDVKDRRCILFDDIADSAGTLCNAAQALMAHGAKSVSAYITHGVLSGAAADRV-------ANSVLTELVVTDSIEAS-DPAKACPKIRYVSCAPLIGEAIR 299          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_PASMU (Ribose-phosphate pyrophosphokinase OS=Pasteurella multocida GN=prs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 59/209 (28.23%), Postives = 101/209 (48.33%), Query Frame = 3
Query:   27 TAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFH---KQLQHFPMIVCNKVRD-GNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQ 641
            TA  +A  LS++   R     ++T D+HA Q + +F   +   F S  P+L++ + +  D  N  +  PD G   R     K L    M + +K R   N   V    GD  GR  ++VDD++ +GGTL +  + L   GA ++ AY TH +F  ++ +    D        L    ++D+ P++  E+ +     VL+L+G +A A++
Sbjct:  109 TAKVVADFLSSVGVDR-----VLTCDLHAEQIQGFFDVPVDNVFGS--PVLVHDMLKKIDMQNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVAQVMHIIGDVAGRDCILVDDMIDTGGTLCKAAEALKERGAKRVFAYATHAVFSGSAAKNLASD-------ALDEVVVTDTIPLS-PEIKALNKVRVLTLSGMLAEAIR 302          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_HYPNA (Ribose-phosphate pyrophosphokinase OS=Hyphomonas neptunium (strain ATCC 15444) GN=prs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 48/159 (30.19%), Postives = 83/159 (52.20%), Query Frame = 3
Query:   42 ARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFH---KQLQHFPMIVCNKVRD--GNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQ 503
            A++++N+  S  G   ++T D+HA Q + +F       F    P++++ +++    + I +  PD G   R     K+L    + + +K R   G   ++ I  GD RG   +++DD+  SGGTL      L  HGA+ +SAYVTHG+   ++ ER E+
Sbjct:  106 AKLVANL-ISTAGADRVLTVDLHAGQIQGFFDIPTDNLFGG--PVMVDDIKERYGKEKIIVVSPDVGGVVRARSLAKRLDDADLAIVDKRRPEAGKSEVMNII-GDVRGARCIMLDDMCDSGGTLANAAAALKEHGASSVSAYVTHGVLSGSAVERIEK 260          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_GLOVI (Ribose-phosphate pyrophosphokinase OS=Gloeobacter violaceus GN=prs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 57/203 (28.08%), Postives = 99/203 (48.77%), Query Frame = 3
Query:   42 ARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKR---FHKQLQHFPMIVCNKVRDG-NQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASAL 638
            A++++N+ T+  G   ++  D+H+ Q + YF   +   + S + L   + +QL D   + I  PD G   R   F K+L   P+ + +K R   N+  V    GD +G+  ++VDD++ + GT+ E  KVL   GA ++ A  TH +F + + +R    T        T   ++++ PV        P   VLS+A  I  A+
Sbjct:  129 AKLVANLITA-AGVDRVLAMDLHSAQIQAYFDIPLDHVYGSPVLLQYIKEKQLGD---MVIVSPDVGGVSRARAFAKKLDDAPLAIVDKRRQAPNEVEVMNVIGDVKGKTAILVDDMIDTAGTISEAAKVLLRQGAKEVYACATHAVFSSRAIDRLSDGT-------FTEVLVTNTIPVPPDRRF--PQLRVLSVADLIGEAI 318          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_ECOLI (Ribose-phosphate pyrophosphokinase OS=Escherichia coli (strain K12) GN=prs PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 64/209 (30.62%), Postives = 99/209 (47.37%), Query Frame = 3
Query:   27 TAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFH---KQLQHFPMIVCNKVRD-GNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQ 641
            TA  +A  LS++   R     ++T D+HA Q + +F   +   F S  P+LL  + QL + DN  +  PD G   R     K L    M + +K R   N   V    GD  GR  V+VDD++ +GGTL +  + L   GA ++ AY TH IF   +             S +    + D+ P++  E+ S P    L+L+G +A A++
Sbjct:  109 TAKVVADFLSSVGVDR-----VLTVDLHAEQIQGFFDVPVDNVFGS--PILLEDMLQL-NLDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLR-------NSVIDEVVVCDTIPLS-DEIKSLPNVRTLTLSGMLAEAIR 301          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_ECOL6 (Ribose-phosphate pyrophosphokinase OS=Escherichia coli O6 GN=prs PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 64/209 (30.62%), Postives = 99/209 (47.37%), Query Frame = 3
Query:   27 TAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFH---KQLQHFPMIVCNKVRD-GNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQ 641
            TA  +A  LS++   R     ++T D+HA Q + +F   +   F S  P+LL  + QL + DN  +  PD G   R     K L    M + +K R   N   V    GD  GR  V+VDD++ +GGTL +  + L   GA ++ AY TH IF   +             S +    + D+ P++  E+ S P    L+L+G +A A++
Sbjct:  109 TAKVVADFLSSVGVDR-----VLTVDLHAEQIQGFFDVPVDNVFGS--PILLEDMLQL-NLDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLR-------NSVIDEVVVCDTIPLS-DEIKSLPNVRTLTLSGMLAEAIR 301          
BLAST of CX297877 vs. ExPASy Swiss-Prot
Match: KPRS_ECO57 (Ribose-phosphate pyrophosphokinase OS=Escherichia coli O157:H7 GN=prs PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 64/209 (30.62%), Postives = 99/209 (47.37%), Query Frame = 3
Query:   27 TAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKRFH---KQLQHFPMIVCNKVRD-GNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFEQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIASALQ 641
            TA  +A  LS++   R     ++T D+HA Q + +F   +   F S  P+LL  + QL + DN  +  PD G   R     K L    M + +K R   N   V    GD  GR  V+VDD++ +GGTL +  + L   GA ++ AY TH IF   +             S +    + D+ P++  E+ S P    L+L+G +A A++
Sbjct:  109 TAKVVADFLSSVGVDR-----VLTVDLHAEQIQGFFDVPVDNVFGS--PILLEDMLQL-NLDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVLVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLR-------NSVIDEVVVCDTIPLS-DEIKSLPNVRTLTLSGMLAEAIR 301          
The following BLAST results are available for this feature:
BLAST of CX297877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
KPRS_SALTY3.429e-1230.62Ribose-phosphate pyrophosphokinase OS=Salmonella t... [more]
KPRS_SALTI3.429e-1230.62Ribose-phosphate pyrophosphokinase OS=Salmonella t... [more]
KPRS_CAUCR3.429e-1228.99Ribose-phosphate pyrophosphokinase OS=Caulobacter ... [more]
KPRS_CAUCN3.429e-1228.99Ribose-phosphate pyrophosphokinase OS=Caulobacter ... [more]
KPRS_PASMU4.479e-1228.23Ribose-phosphate pyrophosphokinase OS=Pasteurella ... [more]
KPRS_HYPNA4.479e-1230.19Ribose-phosphate pyrophosphokinase OS=Hyphomonas n... [more]
KPRS_GLOVI4.479e-1228.08Ribose-phosphate pyrophosphokinase OS=Gloeobacter ... [more]
KPRS_ECOLI4.479e-1230.62Ribose-phosphate pyrophosphokinase OS=Escherichia ... [more]
KPRS_ECOL64.479e-1230.62Ribose-phosphate pyrophosphokinase OS=Escherichia ... [more]
KPRS_ECO574.479e-1230.62Ribose-phosphate pyrophosphokinase OS=Escherichia ... [more]

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Properties
Property NameValue
Genbank descriptionC06006B10SK RindPdig24 Citrus clementina cDNA clone C06006B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297877 ID=CX297877; Name=CX297877; organism=Citrus clementina; type=EST; length=701bp
GCATGGAGGATGAGGGAGATGTTGCAACAGCTTTCACTCTTGCTAGGATC
TTGTCAAATATACCAACTTCTAGGGGGGGACCAACTAGCTTAGTGACATT
TGATATACATGCATTGCAGGAGAGGTTCTACTTTGGTGATACTATTTTAC
CATGCTTTGAAAGTGCAATACCTTTGCTGTTAAATAGGCTCCAACAGCTC
CCTGATTCTGACAATATTTCCATTGCTTTTCCTGATGATGGTGCATGGAA
ACGATTTCATAAGCAGCTGCAGCACTTTCCAATGATTGTTTGTAATAAAG
TTCGGGATGGTAACCAAAGGATTGTACGCATTAAGGAGGGAGACCCTCGA
GGACGCCACATTGTGATTGTTGATGATCTGGTTCAATCAGGTGGCACTCT
AATTGAATGTCAGAAAGTGCTAGCAGCCCATGGAGCAGCAAAAATAAGCG
CTTATGTGACGCATGGGATTTTTCCTAACGCGTCGTGGGAACGATTTGAA
CAAGATACTGGAGGAAAACCTGAGTCTGGCTTGACCTACTTCTGGATTAG
TGACTCCTGCCCAGTGACTGTAAAAGAGGTTATGAGCAAACCACCATTTG
AAGTTCTCAGTCTTGCGGGTTCCATTGCATCTGCTCTACAGATATAAATT
TGTTTTGAAATATCTAGTCATATCATATATAGAGAAAGTCCAAGCTGATT
T
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