CX297878

Overview
NameCX297878
Unique NameCX297878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297878 vs. ExPASy Swiss-Prot
Match: CYC_SOLLC (Cytochrome c OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.306e-56
Identity = 102/111 (91.89%), Postives = 107/111 (96.40%), Query Frame = 2
Query:   80 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 412
            ASF+EAPPGN KAGEKIFKTKCAQCHTVEKGAGHK+GPNLNGLFGRQSGTT GYSYSAANKNMAVNW E TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK++TA
Sbjct:    1 ASFNEAPPGNPKAGEKIFKTKCAQCHTVEKGAGHKEGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111          
BLAST of CX297878 vs. ExPASy Swiss-Prot
Match: CYC_ORYSJ (Cytochrome c OS=Oryza sativa subsp. japonica GN=CC-1 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.306e-56
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 2
Query:   77 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 412
            MASF EAPPGN KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYS ANKNMAV WEE TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLK++T+
Sbjct:    1 MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112          
BLAST of CX297878 vs. ExPASy Swiss-Prot
Match: CYC_ORYSI (Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.306e-56
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 2
Query:   77 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 412
            MASF EAPPGN KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYS ANKNMAV WEE TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLK++T+
Sbjct:    1 MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112          
BLAST of CX297878 vs. ExPASy Swiss-Prot
Match: CYC_CANSA (Cytochrome c OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.306e-56
Identity = 97/111 (87.39%), Postives = 108/111 (97.30%), Query Frame = 2
Query:   80 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 412
            ASF++APPG++KAGEKIFKTKCA+CHTV +GAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAV W++KTLYDYLLNPKKYIPGTKMVFPGLKKP++RADLIAYLK+STA
Sbjct:    1 ASFBZAPPGBSKAGEKIFKTKCAECHTVGRGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVTWZZKTLYDYLLNPKKYIPGTKMVFPGLKKPZBRADLIAYLKESTA 111          
BLAST of CX297878 vs. ExPASy Swiss-Prot
Match: CYC_SESIN (Cytochrome c OS=Sesamum indicum PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.136e-56
Identity = 99/111 (89.19%), Postives = 107/111 (96.40%), Query Frame = 2
Query:   80 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 412
            ASF++APPG+ K+GEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAV W E TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK++TA
Sbjct:    1 ASFBZAPPGBVKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVIWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111          
BLAST of CX297878 vs. ExPASy Swiss-Prot
Match: CYC_FRIAG (Cytochrome c OS=Fritillaria agrestis GN=CYTC PE=3 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 1.144e-55
Identity = 100/112 (89.29%), Postives = 107/112 (95.54%), Query Frame = 2
Query:   77 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 412
            MASF EAPPG+ K+GEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKN AVNW+E TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++T+
Sbjct:    1 MASFSEAPPGDFKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVNWDENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATS 112          
BLAST of CX297878 vs. ExPASy Swiss-Prot
Match: CYC_ACENE (Cytochrome c OS=Acer negundo PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.144e-55
Identity = 103/111 (92.79%), Postives = 104/111 (93.69%), Query Frame = 2
Query:   80 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 412
            ASF EAPPGN  AGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAVNW   TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA
Sbjct:    1 ASFAEAPPGNPAAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWGYNTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 111          
BLAST of CX297878 vs. ExPASy Swiss-Prot
Match: CYC_ARUMA (Cytochrome c OS=Arum maculatum PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.348e-55
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 2
Query:   80 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 412
            ASF EAPPGN KAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAV WEE TLYDYLLNP KYIPGTKMVFPGL KPQ+RADLIAYLK+STA
Sbjct:    1 ASFAEAPPGNPKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVIWEESTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLIAYLKESTA 111          
BLAST of CX297878 vs. ExPASy Swiss-Prot
Match: CYC_ALLPO (Cytochrome c OS=Allium porrum PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.265e-54
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = 2
Query:   80 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 412
            A+F +APPG+ KAG+KIFK KCAQCHTVEKGAGHKQGPNLNGLFGRQSGT  GYSYSAANKNMAV W++ TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    1 ATFSZAPPGBZKAGQKIFKLKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTAAGYSYSAANKNMAVVWZZBTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111          
BLAST of CX297878 vs. ExPASy Swiss-Prot
Match: CYC_SOLTU (Cytochrome c OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.158e-54
Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 2
Query:   80 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 412
            ASF EAPPGN KAGEKIFKTKCAQCHTV+KGAGHK+GPNLNGLFGRQSGTT GYSYS ANKNMAV W E TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK++TA
Sbjct:    1 ASFGEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKEGPNLNGLFGRQSGTTAGYSYSNANKNMAVTWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111          
The following BLAST results are available for this feature:
BLAST of CX297878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_SOLLC2.306e-5691.89Cytochrome c OS=Solanum lycopersicum PE=1 SV=2[more]
CYC_ORYSJ2.306e-5690.18Cytochrome c OS=Oryza sativa subsp. japonica GN=CC... [more]
CYC_ORYSI2.306e-5690.18Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1... [more]
CYC_CANSA2.306e-5687.39Cytochrome c OS=Cannabis sativa PE=1 SV=1[more]
CYC_SESIN5.136e-5689.19Cytochrome c OS=Sesamum indicum PE=1 SV=1[more]
CYC_FRIAG1.144e-5589.29Cytochrome c OS=Fritillaria agrestis GN=CYTC PE=3 ... [more]
CYC_ACENE1.144e-5592.79Cytochrome c OS=Acer negundo PE=1 SV=1[more]
CYC_ARUMA4.348e-5591.89Cytochrome c OS=Arum maculatum PE=1 SV=1[more]
CYC_ALLPO1.265e-5487.39Cytochrome c OS=Allium porrum PE=1 SV=1[more]
CYC_SOLTU2.158e-5489.19Cytochrome c OS=Solanum tuberosum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06006B11SK RindPdig24 Citrus clementina cDNA clone C06006B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297878 ID=CX297878; Name=CX297878; organism=Citrus clementina; type=EST; length=618bp
GATTCGGCCGAGGCAGCTCTCTCTCTCTCTCTCTGCGTCTTCTTTCTCTC
TTTGGATCTTTCAAAACACCACAATAATGGCGTCGTTTGATGAGGCACCT
CCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCTCA
GTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTAATTTGA
ACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCATACTCT
GCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTTGTATGA
TTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGGTATTCC
CTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATATTTGAAA
CAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTCCATTTT
GCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTTTTTACC
AATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACTTGACCA
TTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATAATATTCAATT
GAAAAAAAAAAAAAAAAA
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