CX297884

Overview
NameCX297884
Unique NameCX297884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297884 vs. ExPASy Swiss-Prot
Match: ANM42_ORYSI (Probable protein arginine N-methyltransferase 4.2 OS=Oryza sativa subsp. indica GN=PRMT4.2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.222e-37
Identity = 91/253 (35.97%), Postives = 148/253 (58.50%), Query Frame = 1
Query:   31 EEMLKDVLRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED--AEYKDDKIEF----WN-------NVYGFDMSCI--------KKQAMMEPLVDTVDQNQIVTNCQLLKTMD-----ISKMGPXDASFTAPFKLVAQRNDYIHALVAYFDV 711
            +EML D +R  +Y + +++N   F+ KVVLDVG G+GIL+++ A+AGA  VYAVE + MA  A+++  AN  ++++ V++G +E++ LP  KVD+IISEWMGYFLL E+M ++V+ ARD+WL  DG++ P  A ++L  I    AE K + +E     WN       + YG +M+ +        +K  +   + + +  NQ++    ++K +D     + ++    A  T P KL   R   + AL  +FDV
Sbjct:   45 KEMLCDRVRMDAYHSAVFRNAHHFRGKVVLDVGTGSGILAIWSAQAGARKVYAVEATNMAEHARELARANDVADIVEVIQGSMEDVVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPDGVMYPSHARMWLAPIRSDLAENKMEDLEIAMHDWNLFVEDTESYYGVNMNVLTKAYRAEHEKYYLKSAIWNNLHPNQVIGQAAVIKEIDCLTATVDEIREVRAQVTMPIKLDMTR---LAALAGWFDV 293          
BLAST of CX297884 vs. ExPASy Swiss-Prot
Match: CARM1_DROVI (Histone-arginine methyltransferase CARMER OS=Drosophila virilis GN=Art4 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.204e-36
Identity = 89/187 (47.59%), Postives = 119/187 (63.64%), Query Frame = 1
Query:   31 EEMLKDVLRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE-YKD--DKIEFW--NNVYGFDMSCIKKQAMME----PLVDTVD 564
            + M++D +RT +YQ  I  N   F+DK+VLDVGAG+GILS F  +AGAA VYA+E S MA  A+Q+VE+N   + I+V+ GKIEEIELP  KVD+IISE MGY L  E ML T L+AR KWL   G + P    L++    D   Y +  +K  FW  +  +G D++ + K+ M E    P+VDT D
Sbjct:  162 QNMMQDYVRTSTYQRAILGNSIDFQDKIVLDVGAGSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESNNVQHKISVIPGKIEEIELP-EKVDVIISEPMGYMLYNERMLETYLHAR-KWLKPHGKMYPTHGDLHIAPFSDESLYSEQYNKANFWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFD 346          
BLAST of CX297884 vs. ExPASy Swiss-Prot
Match: CARM1_DROPS (Histone-arginine methyltransferase CARMER OS=Drosophila pseudoobscura pseudoobscura GN=Art4 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.204e-36
Identity = 89/187 (47.59%), Postives = 120/187 (64.17%), Query Frame = 1
Query:   31 EEMLKDVLRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE-YKD--DKIEFW--NNVYGFDMSCIKKQAMME----PLVDTVD 564
            + M++D +RT +YQ  I  N   F+DK+VLDVGAG+GILS F  +AGAA VYA+E S MA  A+Q+VE+N   + I+V+ GKIEEIELP  KVD+IISE MGY L  E ML T L+AR KWL  +G + P    L++    D   Y +  +K  FW  +  +G D++ + K+ M E    P+VDT D
Sbjct:  155 QNMMQDYVRTSTYQRAILGNAVDFQDKIVLDVGAGSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESNNVQHKISVIPGKIEEIELP-EKVDVIISEPMGYMLYNERMLETYLHAR-KWLKPNGKMYPTHGDLHIAPFSDESLYSEQYNKANFWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFD 339          
BLAST of CX297884 vs. ExPASy Swiss-Prot
Match: CARM1_DROPE (Histone-arginine methyltransferase CARMER OS=Drosophila persimilis GN=Art4 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.204e-36
Identity = 89/187 (47.59%), Postives = 120/187 (64.17%), Query Frame = 1
Query:   31 EEMLKDVLRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE-YKD--DKIEFW--NNVYGFDMSCIKKQAMME----PLVDTVD 564
            + M++D +RT +YQ  I  N   F+DK+VLDVGAG+GILS F  +AGAA VYA+E S MA  A+Q+VE+N   + I+V+ GKIEEIELP  KVD+IISE MGY L  E ML T L+AR KWL  +G + P    L++    D   Y +  +K  FW  +  +G D++ + K+ M E    P+VDT D
Sbjct:  155 QNMMQDYVRTSTYQRAILGNAVDFQDKIVLDVGAGSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESNNVQHKISVIPGKIEEIELP-EKVDVIISEPMGYMLYNERMLETYLHAR-KWLKPNGKMYPTHGDLHIAPFSDESLYSEQYNKANFWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFD 339          
BLAST of CX297884 vs. ExPASy Swiss-Prot
Match: CARM1_DROMO (Histone-arginine methyltransferase CARMER OS=Drosophila mojavensis GN=Art4 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.204e-36
Identity = 90/187 (48.13%), Postives = 119/187 (63.64%), Query Frame = 1
Query:   31 EEMLKDVLRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE-YKD--DKIEFW--NNVYGFDMSCIKKQAMME----PLVDTVD 564
            + M++D +RT +YQ  I  N   F+DKVVLDVGAG+GILS F  +AGAA VYA+E S MA  A+Q+VE+N   + I+V+ GKIEEIELP  KVD+IISE MGY L  E ML T L+AR KWL   G + P    L++    D   Y +  +K  FW  +  +G D++ + K+ M E    P+VDT D
Sbjct:  163 QNMMQDYVRTSTYQRAILGNAIDFQDKVVLDVGAGSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESNNVQHKISVIPGKIEEIELP-EKVDVIISEPMGYMLYNERMLETYLHAR-KWLKPHGKMYPTHGDLHIAPFSDESLYSEQYNKANFWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFD 347          
BLAST of CX297884 vs. ExPASy Swiss-Prot
Match: CARM1_DROYA (Histone-arginine methyltransferase CARMER OS=Drosophila yakuba GN=Art4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.573e-36
Identity = 89/187 (47.59%), Postives = 119/187 (63.64%), Query Frame = 1
Query:   31 EEMLKDVLRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE-YKD--DKIEFW--NNVYGFDMSCIKKQAMME----PLVDTVD 564
            + M++D +RT +YQ  I  N   F+DK+VLDVGAG+GILS F  +AGAA VYA+E S MA  A+Q+VE+N   + I+V+ GKIEEIELP  KVD+IISE MGY L  E ML T L+AR KWL   G + P    L++    D   Y +  +K  FW  +  +G D++ + K+ M E    P+VDT D
Sbjct:  155 QNMMQDYVRTSTYQRAILGNAVDFQDKIVLDVGAGSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESNNVQHKISVIPGKIEEIELP-EKVDVIISEPMGYMLYNERMLETYLHAR-KWLKPQGKMYPTHGDLHIAPFSDESLYSEQYNKANFWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFD 339          
BLAST of CX297884 vs. ExPASy Swiss-Prot
Match: CARM1_DROWI (Histone-arginine methyltransferase CARMER OS=Drosophila willistoni GN=Art4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.573e-36
Identity = 88/187 (47.06%), Postives = 119/187 (63.64%), Query Frame = 1
Query:   31 EEMLKDVLRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE-YKD--DKIEFW--NNVYGFDMSCIKKQAMME----PLVDTVD 564
            + M++D +RT +YQ  I  N   F+DK++LDVGAG+GILS F  +AGAA VYA+E S MA  A+Q+VE+N   + I+V+ GKIEEIELP  KVD+IISE MGY L  E ML T L+AR KWL   G + P    L++    D   Y +  +K  FW  +  +G D++ + K+ M E    P+VDT D
Sbjct:  157 QNMMQDYVRTSTYQRAILGNAIDFQDKIILDVGAGSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESNNVQHKISVIPGKIEEIELP-EKVDVIISEPMGYMLYNERMLETYLHAR-KWLKPQGKMYPTHGDLHIAPFSDESLYSEQYNKANFWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFD 341          
BLAST of CX297884 vs. ExPASy Swiss-Prot
Match: CARM1_DROSI (Histone-arginine methyltransferase CARMER OS=Drosophila simulans GN=Art4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.573e-36
Identity = 89/187 (47.59%), Postives = 119/187 (63.64%), Query Frame = 1
Query:   31 EEMLKDVLRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE-YKD--DKIEFW--NNVYGFDMSCIKKQAMME----PLVDTVD 564
            + M++D +RT +YQ  I  N   F+DK+VLDVGAG+GILS F  +AGAA VYA+E S MA  A+Q+VE+N   + I+V+ GKIEEIELP  KVD+IISE MGY L  E ML T L+AR KWL   G + P    L++    D   Y +  +K  FW  +  +G D++ + K+ M E    P+VDT D
Sbjct:  155 QNMMQDYVRTSTYQRAILGNAVDFQDKIVLDVGAGSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESNNVQHKISVIPGKIEEIELP-EKVDVIISEPMGYMLYNERMLETYLHAR-KWLKPQGKMYPTHGDLHIAPFSDESLYSEQYNKANFWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFD 339          
BLAST of CX297884 vs. ExPASy Swiss-Prot
Match: CARM1_DROSE (Histone-arginine methyltransferase CARMER OS=Drosophila sechellia GN=Art4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.573e-36
Identity = 89/187 (47.59%), Postives = 119/187 (63.64%), Query Frame = 1
Query:   31 EEMLKDVLRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE-YKD--DKIEFW--NNVYGFDMSCIKKQAMME----PLVDTVD 564
            + M++D +RT +YQ  I  N   F+DK+VLDVGAG+GILS F  +AGAA VYA+E S MA  A+Q+VE+N   + I+V+ GKIEEIELP  KVD+IISE MGY L  E ML T L+AR KWL   G + P    L++    D   Y +  +K  FW  +  +G D++ + K+ M E    P+VDT D
Sbjct:  155 QNMMQDYVRTSTYQRAILGNAVDFQDKIVLDVGAGSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESNNVQHKISVIPGKIEEIELP-EKVDVIISEPMGYMLYNERMLETYLHAR-KWLKPQGKMYPTHGDLHIAPFSDESLYSEQYNKANFWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFD 339          
BLAST of CX297884 vs. ExPASy Swiss-Prot
Match: CARM1_DROME (Probable histone-arginine methyltransferase CARMER OS=Drosophila melanogaster GN=Art4 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.573e-36
Identity = 89/187 (47.59%), Postives = 119/187 (63.64%), Query Frame = 1
Query:   31 EEMLKDVLRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE-YKD--DKIEFW--NNVYGFDMSCIKKQAMME----PLVDTVD 564
            + M++D +RT +YQ  I  N   F+DK+VLDVGAG+GILS F  +AGAA VYA+E S MA  A+Q+VE+N   + I+V+ GKIEEIELP  KVD+IISE MGY L  E ML T L+AR KWL   G + P    L++    D   Y +  +K  FW  +  +G D++ + K+ M E    P+VDT D
Sbjct:  155 QNMMQDYVRTSTYQRAILGNAVDFQDKIVLDVGAGSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESNNVQHKISVIPGKIEEIELP-EKVDVIISEPMGYMLYNERMLETYLHAR-KWLKPQGKMYPTHGDLHIAPFSDESLYSEQYNKANFWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFD 339          
The following BLAST results are available for this feature:
BLAST of CX297884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ANM42_ORYSI9.222e-3735.97Probable protein arginine N-methyltransferase 4.2 ... [more]
CARM1_DROVI1.204e-3647.59Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROPS1.204e-3647.59Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROPE1.204e-3647.59Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROMO1.204e-3648.13Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROYA1.573e-3647.59Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROWI1.573e-3647.06Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROSI1.573e-3647.59Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROSE1.573e-3647.59Histone-arginine methyltransferase CARMER OS=Droso... [more]
CARM1_DROME1.573e-3647.59Probable histone-arginine methyltransferase CARMER... [more]

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Properties
Property NameValue
Genbank descriptionC06006C06SK RindPdig24 Citrus clementina cDNA clone C06006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297884 ID=CX297884; Name=CX297884; organism=Citrus clementina; type=EST; length=716bp
GATTCGGCCGAGGCTCACTTTGGTATTCATGAAGAAATGCTAAAGGATGT
ACTGAGAACTAAGTCATATCAAAATGTTATTTATCAGAACAAGTTTCTTT
TCAAGGACAAAGTAGTTCTTGATGTTGGAGCCGGGACTGGAATTTTATCC
TTATTTTGTGCAAAAGCAGGGGCAGCTCATGTTTATGCAGTTGAGTGCTC
CCAAATGGCTAACATGGCTAAACAGATTGTCGAAGCAAATGGATTTTCTA
ATGTTATAACAGTTTTAAAAGGGAAGATTGAAGAAATTGAGCTCCCAGTT
ACAAAAGTGGATATAATTATTTCAGAGTGGATGGGTTATTTTTTGTTGTT
CGAGAACATGCTAAATACAGTCTTGTATGCTCGTGATAAATGGCTAGTTG
ATGATGGAATTGTGTTACCAGATAAAGCTTCTCTCTATTTGACAGCCATT
GAAGATGCTGAGTACAAAGATGACAAGATTGAATTTTGGAATAACGTCTA
TGGCTTTGACATGAGCTGCATCAAGAAGCAAGCTATGATGGAACCTCTTG
TTGACACAGTTGATCAGAATCAAATTGTTACCAACTGCCAGCTACTCAAG
ACAATGGATATCTCCAAGATGGGACCTGNGGATGCTTCCTTTACAGCTCC
ATTTAAGCTTGTGGCACAACGTAATGATTACATCCATGCTCTTGTAGCAT
ATTTTGACGTAACCTT
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