CX297885

Overview
NameCX297885
Unique NameCX297885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NFU1_DROPS (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA22888 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  280 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNE-ENIEKVLEEIRP--YLVGAAGG 588
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V D+   +   E E  EK L++  P    VG  GG
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDDVDRMADKEFERFEKNLKQKEPAGAPVGIGGG 284          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NFU1_DROWI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila willistoni GN=GK25604 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 39/94 (41.49%), Postives = 58/94 (61.70%), Query Frame = 1
Query:  280 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNE-ENIEKVLEE 555
            T   I+ +LD  IRP +  DGG++     D  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE   +   E E  E+ L++
Sbjct:  179 TVMMIKELLDTRIRPTVQEDGGDIVFMSYDNGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADKMADKEFERFERNLKQ 272          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NFU1_DROSI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila simulans GN=GD15490 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  280 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE-ETGLELNEENIEKVLEEIRPYLVGAAGG 588
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE +  ++   E  EK L+ ++    G +GG
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADRMIDSEFERFEKNLKTLKQQ--GPSGG 280          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NFU1_DROER (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila erecta GN=GG17526 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  280 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE-ETGLELNEENIEKVLEEIRPYLVGAAG 585
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE +  ++   E  EK L+ ++      AG
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADRMIDSEFERFEKNLKTLKQQEPSGAG 281          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NFU1_DROYA (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila yakuba GN=GE15286 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  280 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNE-ENIEKVLEEIR 561
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE   +  +E E  EK L+ ++
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADRMVDSEFERFEKNLKTLK 273          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NFU1_DROSE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila sechellia GN=GM13534 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  280 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE-ETGLELNEENIEKVLEEIR 561
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE +  ++   E  EK L+ ++
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADRMIDSEFERFEKNLKTLK 273          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NFU1_DROGR (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila grimshawi GN=GH17809 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  280 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNE-ENIEKVLEE 555
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE   +  +E E  EK L++
Sbjct:  190 TVMMIKELLDTRIRPTVQEDGGDIVFISYEKGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEVDKVANSEFERFEKSLKQ 283          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NFU1_MOUSE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Mus musculus GN=Nfu1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1
Query:  292 IESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEE 507
            I+ +LD  IRP +  DGG+V     +  +VRLKLQG+C SCPSS++T+K GI+  L   IPE+  VE V D++
Sbjct:  173 IKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVMDDD 245          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NFU1_HUMAN (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Homo sapiens GN=NFU1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  292 IESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEET 510
            I+ +LD  IRP +  DGG+V     +  +V+LKLQG+C SCPSS++T+K GI+  L   IPE+  VE V D+E+
Sbjct:  173 IKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQVMDDES 246          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NFU1_DROVI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila virilis GN=GJ19011 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  280 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNE-ENIEKVL 549
            T   I+ +LD  IRP +  DGG++     +  +V+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V D+   +   E E  EK L
Sbjct:  186 TVMMIKELLDTRIRPTVQEDGGDIVFMGYENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDDADKMANKEFERFEKSL 277          
The following BLAST results are available for this feature:
BLAST of CX297885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
NFU1_DROPS1.648e-1240.19NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROWI2.152e-1241.49NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROSI2.152e-1239.05NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROER2.152e-1238.46NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROYA3.671e-1240.63NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROSE4.794e-1239.58NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROGR4.794e-1241.49NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_MOUSE8.178e-1247.95NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_HUMAN1.395e-1147.30NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROVI1.822e-1140.22NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionC06006C07SK RindPdig24 Citrus clementina cDNA clone C06006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297885 ID=CX297885; Name=CX297885; organism=Citrus clementina; type=EST; length=730bp
GATTCGGCCGAGGCGAAGAAATCAAAGAGAAAGATGCAAGGCGTTGTGTT
GAACCCAACTTACAGTCGCCCTCACCAAACCCTAGACTCTCCTTCTTGTT
CTCGTCCTGCCTCTAAGAGTACTAAAAGTTTCTTTGGAGAACGAGTTTCG
CTTACGAGGTGGCGGAATCCGGTGCGTCACAGCTCGTGTCGGTTACTGCT
GATTCGGAAGCGTGGGGCCGCGCGAAGGAACGTCATAAAGGCTGTGGCTA
CTCCTGATTCAGCTATTGAGTTACCTTTAACTGCTGAGAATATTGAAAGT
GTATTGGATGAAATTCGACCATATCTTATATCAGATGGGGGAAATGTGGC
ATTACATGAGATTGATGGCAATGTTGTACGATTGAAGCTACAGGGAGCAT
GTGGGTCTTGTCCCAGTTCTGTTATGACGATGAAGATGGGTATTGAGCGT
CGCTTAATGGAGAAGATCCCCGAGATAGTTGCAGTGGAATCGGTAGCAGA
TGAAGAAACTGGGCTTGAGCTGAATGAAGAAAATATAGAGAAGGTACTTG
AGGAAATCAGGCCCTATCTTGTTGGGGCAGCAGGTGGATCACTTGAACTT
GTGGCAATTGATGAGCCAATAGTTAAAGTTCGAATTACGGGTCCGGCAGC
TGGAGTCATGACTGTTCGTGTGGCTGTTACCCAAAGTTGCGTGAAAAAAT
CCAGCCATTGCAGCAGTTCACTTTCTGTAT
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