CX297885

Overview
NameCX297885
Unique NameCX297885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NIFU_PLEBO (Nitrogen fixation protein nifU (Fragment) OS=Plectonema boryanum GN=nifU PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 37/90 (41.11%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:  241 AVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 495
            A    ++ I  PLT       I+ VLDE +RP LI+DGG+V L+++DG+ V++ L+GACGSC SS  T+K  +E +L  ++   + V++V
Sbjct:  116 AAEISEAQIRKPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDFVKVTLKGACGSCASSTATLKDAVEAKLRLRVLPTLVVQAV 205
[Close]
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NFU1_DROAN (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila ananassae GN=GF20932 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 36/98 (36.73%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:  280 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVAD-----EETGLELNEENIEKVLEE 555
            T   I+ +LD  IRP +  DGG++     +  +V+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V D      ++  E  E N++ + E+
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDAVDKMADSEFERFERNLKALKEK 275
The following BLAST results are available for this feature:
BLAST of CX297885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
NIFU_PLEBO2.379e-1141.11Nitrogen fixation protein nifU (Fragment) OS=Plect... [more]
NFU1_DROAN5.301e-1136.73NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionC06006C07SK RindPdig24 Citrus clementina cDNA clone C06006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297885 ID=CX297885; Name=CX297885; organism=Citrus clementina; type=EST; length=730bp
GATTCGGCCGAGGCGAAGAAATCAAAGAGAAAGATGCAAGGCGTTGTGTT
GAACCCAACTTACAGTCGCCCTCACCAAACCCTAGACTCTCCTTCTTGTT
CTCGTCCTGCCTCTAAGAGTACTAAAAGTTTCTTTGGAGAACGAGTTTCG
CTTACGAGGTGGCGGAATCCGGTGCGTCACAGCTCGTGTCGGTTACTGCT
GATTCGGAAGCGTGGGGCCGCGCGAAGGAACGTCATAAAGGCTGTGGCTA
CTCCTGATTCAGCTATTGAGTTACCTTTAACTGCTGAGAATATTGAAAGT
GTATTGGATGAAATTCGACCATATCTTATATCAGATGGGGGAAATGTGGC
ATTACATGAGATTGATGGCAATGTTGTACGATTGAAGCTACAGGGAGCAT
GTGGGTCTTGTCCCAGTTCTGTTATGACGATGAAGATGGGTATTGAGCGT
CGCTTAATGGAGAAGATCCCCGAGATAGTTGCAGTGGAATCGGTAGCAGA
TGAAGAAACTGGGCTTGAGCTGAATGAAGAAAATATAGAGAAGGTACTTG
AGGAAATCAGGCCCTATCTTGTTGGGGCAGCAGGTGGATCACTTGAACTT
GTGGCAATTGATGAGCCAATAGTTAAAGTTCGAATTACGGGTCCGGCAGC
TGGAGTCATGACTGTTCGTGTGGCTGTTACCCAAAGTTGCGTGAAAAAAT
CCAGCCATTGCAGCAGTTCACTTTCTGTAT
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