CX298052

Overview
NameCX298052
Unique NameCX298052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.891e-18
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 2
Query:    5 EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 181
            +PKF+K GDA ++KM P+KPM VE+F +YPPLGRFAVRDM+QTVAVGVIK VEKK+  G
Sbjct:  275 DPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKEAGG 333          
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.470e-18
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    8 PKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 172
            PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAVGVIK V K D
Sbjct:  391 PKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDD 445          
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.226e-18
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 2
Query:    8 PKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 169
            PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKSVEKK
Sbjct:  391 PKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444          
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 2
Query:    5 EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 181
            EPKF+K+G+A +V+M+P KPM VE F+ YPPLGRFAVRDM+QTVAVGVIK V KK+  G
Sbjct:  378 EPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDMKQTVAVGVIKEVVKKEQKG 436          
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 2
Query:    8 PKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 172
            PKF+KNGDA +V +IPTK + VE F +YPPLGR+AVRDM+QTVAVGVIK VEKKD
Sbjct:  380 PKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 2
Query:    8 PKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 169
            PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  391 PKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 2
Query:    8 PKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 169
            PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  391 PKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 2
Query:    8 PKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 169
            PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  391 PKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 2
Query:    8 PKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 169
            PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  391 PKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CX298052 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 2
Query:    8 PKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 169
            PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  391 PKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
The following BLAST results are available for this feature:
BLAST of CX298052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
EF1A_EIMBO1.891e-1871.19Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A4_OSCTI2.470e-1878.18Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A_DANRE3.226e-1881.48Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A_STYLE4.214e-1869.49Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A_TETPY5.503e-1874.55Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A2_RAT5.503e-1879.63Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_RABIT5.503e-1879.63Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_MOUSE5.503e-1879.63Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A2_HUMAN5.503e-1879.63Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]
EF1A2_BOVIN5.503e-1879.63Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]

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Properties
Property NameValue
Genbank descriptionC06008B01SK RindPdig24 Citrus clementina cDNA clone C06008B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298052 ID=CX298052; Name=CX298052; organism=Citrus clementina; type=EST; length=542bp
AGGGGAGCCCAAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGA
TTCCCACCAAGCCCATGGTTGTTGAGACCTTCTCCGATTACCCACCCCTT
GGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTAT
CAAGAGTGTTGAGAAGAAGGATCCCACAGGTGCGAAGGTCACCAAGTCCG
CAGCCAAGAAGAAATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAGG
GTTTATTTTCTGTCTTTTTTTATTTTCTTGTCTGTTTTTGTTTTGCATCA
ATGTTTCTGCAAACAGCCCTATTTGGTTCCACCAGTTTGCTGTTGAGCAA
TTGGGATGTTATCTTTCTGCTTAACTGGCTGTGGTGGGGGTTCGGATTTT
TATATTCTGAATTTGGTTAATAGCATTAAATTGAGTTGTGAAGTTTATAG
ACCAGCTGCTGGATGTCAAAGTTGGTGGTTTTAATACATTTGGAAGCTCA
TTTTAAGCTCTTTAAAAAAAANAAAAAAAAAAAAAAAAAAAN
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