CX298063

Overview
NameCX298063
Unique NameCX298063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_MACFA (60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 3
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 284
            WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R  +KKNPLKNL  ML+LNPYAKT R  ++L +A+
Sbjct:  252 WTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRWNTILRQAR 345          
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 3
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKR--APMKK-NPLKNLNTMLRLNPYAKTARR 260
            WTKSAFE+LD  +G F K S +KKGY LPR  + NAD+ R++NSDE+Q+ VR  K  VKR  AP+++ NPLKNL  M++LNP A + RR
Sbjct:  251 WTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKRPTAPVRRSNPLKNLRAMIKLNPAAVSTRR 339          
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_CANFA (60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 3
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 284
            WT+SAF KLD++YG + K +  K  Y LP  KM+N DL+RI+        +R  + ++ R  +KKNPLKNL  ML+LNPYAKT RR ++L +A+
Sbjct:  252 WTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKMPRDPRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAK 345          
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_URECA (60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 3
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRV 290
            WT+SAF++LD IYG + + S +K  Y LP  KM N DL+R++ SDE+Q+ +R  K +  R   KKNPLKN   M+RLNP+A   +  +   E +R+
Sbjct:  251 WTESAFKQLDNIYGTWKRPSAEKSHYNLPMPKMTNTDLSRLLKSDEIQNALREPKKDKARRLQKKNPLKNYRVMMRLNPFAGAQKAAAKAVEQRRL 346          
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_DROME (60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 40/95 (42.11%), Postives = 66/95 (69.47%), Query Frame = 3
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQR 287
            WT+SAF +L++++G + K S  KKGY LP+ KM N DL+R++ S+E++ V+R  +  V R+  + NPL N+  +++LNPYA+  +R + LA  +R
Sbjct:  255 WTESAFARLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKR 349          
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4A_SCHPO (60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 3
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPI-KTEVKRAPM-KKNPLKNLNTMLRLNPYAK 248
            WTKSAF  LD ++G   + ++ KK Y LP   + NAD+ R+INSDE+QS+V+    + VKRA + KKNPLKN   + RLNPYAK
Sbjct:  252 WTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAK 335          
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4B_SCHPO (60S ribosomal protein L4-B OS=Schizosaccharomyces pombe GN=rpl4b PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 3
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPI-KTEVKRAPM-KKNPLKNLNTMLRLNPYAK 248
            WTKSAF  LD ++G   + ++ KK Y LP   + NAD+ R+INSDE+QS+V+    + VKRA + KKNPLKN   + RLNPYAK
Sbjct:  252 WTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAK 335          
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4B_YEAST (60S ribosomal protein L4-B OS=Saccharomyces cerevisiae GN=RPL4B PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 3
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPI--KTEVKRAPMKKNPLKNLNTMLRLNPYAK 248
            WT++AF KLD+++G  +  +  K GY LP   +  +D+ RIINS E+QS +RP    T+ +   +KKNPLKN   +LRLNPYAK
Sbjct:  250 WTEAAFTKLDQVWGS-ETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAK 332          
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4A_YEAST (60S ribosomal protein L4-A OS=Saccharomyces cerevisiae GN=RPL4A PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 3
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPI--KTEVKRAPMKKNPLKNLNTMLRLNPYAK 248
            WT++AF KLD+++G  +  +  K GY LP   +  +D+ RIINS E+QS +RP    T+ +   +KKNPLKN   +LRLNPYAK
Sbjct:  250 WTEAAFTKLDQVWGS-ETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAK 332          
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_TRYBB (60S ribosomal protein L4 OS=Trypanosoma brucei brucei GN=RPL4 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.534e-14
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 3
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNP---LKNLNTMLRLNPYAKTARRMS 266
            WTKSAFEKLD+I+G F + S  K G++LP   + + D+ RI+ S+EV+ V++P K + KR    + P   ++N    LRLNP+ K  + M+
Sbjct:  250 WTKSAFEKLDKIFGTFTEPSTVKSGFMLPAPMLTSTDVTRIMQSEEVRRVLKPKKLQPKRPSRYRQPTNGIRNRRLRLRLNPFQKKEKAMA 340          
The following BLAST results are available for this feature:
BLAST of CX298063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL4_MACFA3.236e-2151.0660S ribosomal protein L4 OS=Macaca fascicularis GN... [more]
RL4_DICDI7.208e-2156.1860S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4_CANFA5.166e-1947.8760S ribosomal protein L4 OS=Canis familiaris GN=RP... [more]
RL4_URECA7.459e-1844.7960S ribosomal protein L4 OS=Urechis caupo GN=RPL4 ... [more]
RL4_DROME2.170e-1742.1160S ribosomal protein L4 OS=Drosophila melanogaste... [more]
RL4A_SCHPO6.981e-1652.3860S ribosomal protein L4-A OS=Schizosaccharomyces ... [more]
RL4B_SCHPO2.031e-1552.3860S ribosomal protein L4-B OS=Schizosaccharomyces ... [more]
RL4B_YEAST2.246e-1447.6260S ribosomal protein L4-B OS=Saccharomyces cerevi... [more]
RL4A_YEAST2.246e-1447.6260S ribosomal protein L4-A OS=Saccharomyces cerevi... [more]
RL4_TRYBB6.534e-1441.7660S ribosomal protein L4 OS=Trypanosoma brucei bru... [more]

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Properties
Property NameValue
Genbank descriptionC06008B12SK RindPdig24 Citrus clementina cDNA clone C06008B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298063 ID=CX298063; Name=CX298063; organism=Citrus clementina; type=EST; length=723bp
TTTGGACTAAATCGGCTTTTGAGAAGCTTGATGAAATTTATGGTAAGTTT
GATAAGGGTTCCGAGAAGAAGAAGGGTTATGTGCTGCCTCGTGCTAAGAT
GGTCAACGCTGATTTGGCTAGGATTATTAACTCGGATGAGGTGCAGTCTG
TTGTAAGGCCGATTAAGACTGAGGTTAAGAGGGCTCCAATGAAGAAAAAT
CCTCTCAAGAACTTGAATACGATGTTGCGGTTGAACCCATATGCTAAGAC
TGCTCGGAGGATGTCTCTTTTGGCTGAGGCACAACGGGTTAAAGCTAAGA
AGGAGAAGCTCGACAAGAAAAGGAAGCCCATCACTAAGGAGGAGGCTGCT
GCGATCAAGGCTGCAGGCAAGGCATGGTACCAGACGATGATCTCAGACAG
TGATTATACTGAGTTTGAGAACTTCTCAAAATGGTTGGGTGTCTCACAGT
AATCTGATTGTTGGTTTTTTAATTTTGTTTTCAAGACAATATTTTGTTTA
TCTTTACTGATTTTGTTGTTGAATTGTAGTCTCTTTGGCTCTTTTGAGTC
ATGATGAGAATGTGTGGAAGGAAGATGAGTGGATTTGGGAAATGTGTAGA
CTTTTGTTTCTCCTTCCTCCATTTTTTGTCTCTATCGGCTAGGTGGAAGT
ATTTTCTTCAATGTTAGAATTTGGAGTATATGTTTTAGGAGACGGATTCA
TTGTCTTAATGGTACTATCTTAT
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