CX298063

Overview
NameCX298063
Unique NameCX298063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_XENTR (60S ribosomal protein L4 (Fragment) OS=Xenopus tropicalis GN=rpl4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.534e-14
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 3 
Query:    3 WTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNL 215
            WT+S+F KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR  +KKNPLKNL
Sbjct:   26 WTESSFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNL 96
[Close]
BLAST of CX298063 vs. ExPASy Swiss-Prot
Match: RL4_CAEEL (60S ribosomal protein L4 OS=Caenorhabditis elegans GN=rpl-4 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 3 
Query:    3 WTKSAFEKLDEIYGK-FDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMS 266
            WT+SAF+KLD IYG      S+ KKG+ +P   M N+D +RII S+EV   +R  K       + +NPLK    + +LNPYA   R+ S
Sbjct:  251 WTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRKAS 339
The following BLAST results are available for this feature:
BLAST of CX298063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL4_XENTR8.534e-1450.7060S ribosomal protein L4 (Fragment) OS=Xenopus tro... [more]
RL4_CAEEL4.683e-1242.7060S ribosomal protein L4 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionC06008B12SK RindPdig24 Citrus clementina cDNA clone C06008B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298063 ID=CX298063; Name=CX298063; organism=Citrus clementina; type=EST; length=723bp
TTTGGACTAAATCGGCTTTTGAGAAGCTTGATGAAATTTATGGTAAGTTT
GATAAGGGTTCCGAGAAGAAGAAGGGTTATGTGCTGCCTCGTGCTAAGAT
GGTCAACGCTGATTTGGCTAGGATTATTAACTCGGATGAGGTGCAGTCTG
TTGTAAGGCCGATTAAGACTGAGGTTAAGAGGGCTCCAATGAAGAAAAAT
CCTCTCAAGAACTTGAATACGATGTTGCGGTTGAACCCATATGCTAAGAC
TGCTCGGAGGATGTCTCTTTTGGCTGAGGCACAACGGGTTAAAGCTAAGA
AGGAGAAGCTCGACAAGAAAAGGAAGCCCATCACTAAGGAGGAGGCTGCT
GCGATCAAGGCTGCAGGCAAGGCATGGTACCAGACGATGATCTCAGACAG
TGATTATACTGAGTTTGAGAACTTCTCAAAATGGTTGGGTGTCTCACAGT
AATCTGATTGTTGGTTTTTTAATTTTGTTTTCAAGACAATATTTTGTTTA
TCTTTACTGATTTTGTTGTTGAATTGTAGTCTCTTTGGCTCTTTTGAGTC
ATGATGAGAATGTGTGGAAGGAAGATGAGTGGATTTGGGAAATGTGTAGA
CTTTTGTTTCTCCTTCCTCCATTTTTTGTCTCTATCGGCTAGGTGGAAGT
ATTTTCTTCAATGTTAGAATTTGGAGTATATGTTTTAGGAGACGGATTCA
TTGTCTTAATGGTACTATCTTAT
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