CX298070 | Citrus Genome Database

Overview


Name	CX298070
Unique Name	CX298070
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	460

Libraries


Library Name	Type
RindPdig24	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.693e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1

Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.693e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1

Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.693e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1

Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.693e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1

Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.693e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1

Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.693e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1

Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.693e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1

Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.693e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1

Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.693e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1

Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.693e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1

Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CX298070 vs. ExPASy Swiss-Prot

BLAST of CX298070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92


Match Name	E-value	Identity	Description
UBIQ_LUPAL	1.693e-31	95.71	Ubiquitin OS=Lupinus albus PE=3 SV=1	[more]
UBIQ_LINUS	1.693e-31	95.71	Ubiquitin OS=Linum usitatissimum PE=3 SV=1	[more]
UBIQ_HORVU	1.693e-31	95.71	Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1	[more]
UBIQ_HELAN	1.693e-31	95.71	Ubiquitin OS=Helianthus annuus PE=3 SV=1	[more]
UBIQ_DESAN	1.693e-31	95.71	Ubiquitin OS=Deschampsia antarctica PE=2 SV=1	[more]
UBIQ_DAUCA	1.693e-31	95.71	Ubiquitin OS=Daucus carota PE=3 SV=1	[more]
UBIQ_BRARA	1.693e-31	95.71	Ubiquitin OS=Brassica rapa PE=3 SV=1	[more]
UBIQ_AVESA	1.693e-31	95.71	Ubiquitin OS=Avena sativa PE=1 SV=1	[more]
UBIQ_AVEFA	1.693e-31	95.71	Ubiquitin OS=Avena fatua PE=3 SV=1	[more]
UBIQ_ASPOF	1.693e-31	95.71	Ubiquitin OS=Asparagus officinalis PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C06008C07SK RindPdig24 Citrus clementina cDNA clone C06008C07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX298070 ID=CX298070; Name=CX298070; organism=Citrus clementina; type=EST; length=460bp
GAGGGCAGATTTTCGTGAAGCATTGACGGGAAAACCATTACCCTGGAGGT
TGAGAGTTCAGACACCATTGATAATGTGAAGGCTAAAATCCAGGACAAGG
AAGGGATTCCTCCAGATCAGCAGAGGTTGATTTTTGCCGGGAAGCAGCTG
GAGGATGGGCGTACTTTGGCTGACTACAATATCCAGAAGGAGTCTACTTT
ACATCTTGTCCTTCGCCTGCGTGGTGGTTTTTAATGGCACTCTGGTCCAC
TGCCAGTGTCTGTGTTCTTTGGGTTTGCTTTCTTTTTTCTGTTTCGTTTG
TGGCCTTAATGACTTAGATTAAGCTGCAAAATGTTGTTTTATGGTATGCT
TATAATAAGCTTTTGTTATCTGTTGTCGTACTCTGAAATGGCCTCTAATA
AGGCTATGGTTTTCTGATTCATGAATAAATTGTCTTGTGTGTGTAAAAAA
AAAAAAAAAA