CX298070

Overview
NameCX298070
Unique NameCX298070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.170e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.170e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.170e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.170e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.170e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.170e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.170e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.170e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.170e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.170e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX298070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_RABIT4.170e-3091.43Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY4.170e-3091.43Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY4.170e-3091.43Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG4.170e-3091.43Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR4.170e-3091.43Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA4.170e-3091.43Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE4.170e-3091.43Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE4.170e-3091.43Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA4.170e-3091.43Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_ICTPU4.170e-3091.43Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06008C07SK RindPdig24 Citrus clementina cDNA clone C06008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298070 ID=CX298070; Name=CX298070; organism=Citrus clementina; type=EST; length=460bp
GAGGGCAGATTTTCGTGAAGCATTGACGGGAAAACCATTACCCTGGAGGT
TGAGAGTTCAGACACCATTGATAATGTGAAGGCTAAAATCCAGGACAAGG
AAGGGATTCCTCCAGATCAGCAGAGGTTGATTTTTGCCGGGAAGCAGCTG
GAGGATGGGCGTACTTTGGCTGACTACAATATCCAGAAGGAGTCTACTTT
ACATCTTGTCCTTCGCCTGCGTGGTGGTTTTTAATGGCACTCTGGTCCAC
TGCCAGTGTCTGTGTTCTTTGGGTTTGCTTTCTTTTTTCTGTTTCGTTTG
TGGCCTTAATGACTTAGATTAAGCTGCAAAATGTTGTTTTATGGTATGCT
TATAATAAGCTTTTGTTATCTGTTGTCGTACTCTGAAATGGCCTCTAATA
AGGCTATGGTTTTCTGATTCATGAATAAATTGTCTTGTGTGTGTAAAAAA
AAAAAAAAAA
back to top