CX298070

Overview
NameCX298070
Unique NameCX298070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.610e-29
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.483e-27
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ G TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 3.304e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1
Query:   34 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 222
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.616e-24
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    7 TLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.697e-23
Identity = 50/71 (70.42%), Postives = 62/71 (87.32%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 231
            ++ GKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG+
Sbjct:    7 TLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGGY 77          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 7.377e-19
Identity = 42/71 (59.15%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 231
            ++ GK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGGF
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGF 77          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.258e-18
Identity = 42/71 (59.15%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 231
            ++ GK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    7 TLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.643e-18
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 231
            ++ GK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.661e-18
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.245e-18
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 231
            ++ GK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGGF
Sbjct:    7 TLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGGF 77          
The following BLAST results are available for this feature:
BLAST of CX298070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_LEIMA4.610e-2988.57Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA1.483e-2785.71Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE3.304e-2795.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVOP7.616e-2474.29Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC1.697e-2370.42Ubiquitin-like protein OS=Autographa californica n... [more]
RUB1_ARATH7.377e-1959.15NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
RUB1_DESAN1.258e-1859.15NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB1_ORYSJ1.643e-1857.75NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB2_ORYSJ3.661e-1858.57NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
NEDD8_CAEEL6.245e-1856.34NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06008C07SK RindPdig24 Citrus clementina cDNA clone C06008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298070 ID=CX298070; Name=CX298070; organism=Citrus clementina; type=EST; length=460bp
GAGGGCAGATTTTCGTGAAGCATTGACGGGAAAACCATTACCCTGGAGGT
TGAGAGTTCAGACACCATTGATAATGTGAAGGCTAAAATCCAGGACAAGG
AAGGGATTCCTCCAGATCAGCAGAGGTTGATTTTTGCCGGGAAGCAGCTG
GAGGATGGGCGTACTTTGGCTGACTACAATATCCAGAAGGAGTCTACTTT
ACATCTTGTCCTTCGCCTGCGTGGTGGTTTTTAATGGCACTCTGGTCCAC
TGCCAGTGTCTGTGTTCTTTGGGTTTGCTTTCTTTTTTCTGTTTCGTTTG
TGGCCTTAATGACTTAGATTAAGCTGCAAAATGTTGTTTTATGGTATGCT
TATAATAAGCTTTTGTTATCTGTTGTCGTACTCTGAAATGGCCTCTAATA
AGGCTATGGTTTTCTGATTCATGAATAAATTGTCTTGTGTGTGTAAAAAA
AAAAAAAAAA
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