CX298070

Overview
NameCX298070
Unique NameCX298070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.065e-17
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.099e-17
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.538e-16
Identity = 37/70 (52.86%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    7 TLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16
Identity = 36/70 (51.43%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16
Identity = 36/70 (51.43%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16
Identity = 36/70 (51.43%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16
Identity = 36/70 (51.43%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16
Identity = 36/70 (51.43%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 8.440e-15
Identity = 34/70 (48.57%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   19 SIDGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            ++ GK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76          
BLAST of CX298070 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.102e-14
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   31 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
            K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:   11 KQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CX298070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
NEDD8_DROME1.065e-1754.29NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
RUB2_ARATH3.099e-1757.14NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
RUB3_ORYSJ1.538e-1652.86NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
NEDD8_RAT4.476e-1651.43NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT4.476e-1651.43NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE4.476e-1651.43NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN4.476e-1651.43NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN4.476e-1651.43NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
NEDD8_DICDI8.440e-1548.57NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
RUB3_ARATH1.102e-1453.03NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionC06008C07SK RindPdig24 Citrus clementina cDNA clone C06008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298070 ID=CX298070; Name=CX298070; organism=Citrus clementina; type=EST; length=460bp
GAGGGCAGATTTTCGTGAAGCATTGACGGGAAAACCATTACCCTGGAGGT
TGAGAGTTCAGACACCATTGATAATGTGAAGGCTAAAATCCAGGACAAGG
AAGGGATTCCTCCAGATCAGCAGAGGTTGATTTTTGCCGGGAAGCAGCTG
GAGGATGGGCGTACTTTGGCTGACTACAATATCCAGAAGGAGTCTACTTT
ACATCTTGTCCTTCGCCTGCGTGGTGGTTTTTAATGGCACTCTGGTCCAC
TGCCAGTGTCTGTGTTCTTTGGGTTTGCTTTCTTTTTTCTGTTTCGTTTG
TGGCCTTAATGACTTAGATTAAGCTGCAAAATGTTGTTTTATGGTATGCT
TATAATAAGCTTTTGTTATCTGTTGTCGTACTCTGAAATGGCCTCTAATA
AGGCTATGGTTTTCTGATTCATGAATAAATTGTCTTGTGTGTGTAAAAAA
AAAAAAAAAA
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