CX298072

Overview
NameCX298072
Unique NameCX298072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_BARQU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella quintana GN=sucB PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.014e-47
Identity = 93/165 (56.36%), Postives = 121/165 (73.33%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A   AL+  P VNA                 AVGT KGLVVPV+R++++M+ AEIEKEIS L + A DG +++ +M GGTFTI+NGGVYGSL+STPI+N PQS ILGMH+I  R MVVGG ++  PMMY+AL+YDHR++DG+EAV FL R+K+ +EDP RL+LD+
Sbjct:  246 AVCHALKEFPTVNAEIDGTDIVYKNYVNAGIAVGTDKGLVVPVVRDADQMSLAEIEKEISRLGRLARDGKLAVSDMQGGTFTITNGGVYGSLMSTPILNAPQSGILGMHAIKERAMVVGGQIIICPMMYLALSYDHRIVDGQEAVTFLVRVKESLEDPERLVLDL 410          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_BARVB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella vinsonii subsp. berkhofii GN=sucB PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.853e-47
Identity = 92/165 (55.76%), Postives = 119/165 (72.12%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A   AL+  P VNA                 AVGT KGLVVPV+R++++M+ AEIEKEI  L + A DG +++ +M GGTFTI+NGGVYGSL+STPI+N PQS ILGMH+I  R MVV G +  RPMMY+AL+YDHR++DG+EAV FL R+K+ +EDP RL+LD+
Sbjct:  247 AVCHALKELPAVNAEIDGTDIIYKNYVNAGIAVGTDKGLVVPVVRDADQMSLAEIEKEIGRLGRLARDGKLAVSDMQGGTFTITNGGVYGSLMSTPILNAPQSGILGMHAIKERAMVVDGQIAIRPMMYLALSYDHRIVDGQEAVTFLVRVKESLEDPERLVLDL 411          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_RICFE (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia felis GN=sucB PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.571e-47
Identity = 91/165 (55.15%), Postives = 123/165 (74.55%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A + AL+  P VNA                 AVGT++GLVVPV+R++++M FAE+EK I TLAKKA +G +S+ +++GGTF+ISNGGVYGSLLSTPIINPPQS ILG+H    R +V+ G +  RPMMYIAL+YDHR+IDG+E V FL +IK+++E+P +LLL++
Sbjct:  237 ATIEALKLIPSVNAEIDGDDLVYKNYYDIGVAVGTEQGLVVPVVRDADKMGFAEVEKAIGTLAKKAREGKLSMADLSGGTFSISNGGVYGSLLSTPIINPPQSGILGLHKTEERAVVIDGKIEIRPMMYIALSYDHRIIDGKEGVSFLVKIKELIENPEKLLLNL 401          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_RICTY (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia typhi GN=sucB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.261e-46
Identity = 90/165 (54.55%), Postives = 123/165 (74.55%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A + AL+  P +NA                 AVGT++GLVVPVIR++++M+FA+IE+ I  LAKKA +G +SI +++GGTF+ISNGGVYGSLLSTPIINPPQS ILG+H    R +V+ G +  RPMMYIAL+YDHR+IDG+E V FL +IK+++E+P +LLL++
Sbjct:  234 ATIEALKLIPSINAEIDGDDLLYKNYYDIGVAVGTEQGLVVPVIRDADKMSFADIEQAIGNLAKKAREGKLSISDLSGGTFSISNGGVYGSLLSTPIINPPQSGILGLHKTEERAVVIDGKIEIRPMMYIALSYDHRIIDGKEGVSFLVKIKNLIENPEKLLLNL 398          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_RALEH (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sucB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.261e-46
Identity = 90/165 (54.55%), Postives = 123/165 (74.55%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            AAV AL+  P++NA                 AVG+ +GLVVP++RN+++M+ A+IEK+I+    KA DG +S++E+ GGTF+ISNGGV+GS+LSTPIINPPQSAILG+H+  +RP+V  G +V RPM Y+A++YDHR+IDGREAV  L  +KD +EDP RLLLD+
Sbjct:  252 AAVHALKKFPLINASIDGNDIVYHGYFDIGIAVGSPRGLVVPILRNADQMSLADIEKKIAEFGVKARDGKLSLEELTGGTFSISNGGVFGSMLSTPIINPPQSAILGVHATKDRPVVEDGQIVIRPMNYLAMSYDHRIIDGREAVLGLVAMKDALEDPARLLLDL 416          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_RICBR (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=sucB PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.259e-46
Identity = 91/165 (55.15%), Postives = 121/165 (73.33%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A + AL+  P VNA                 AVGT++GLVVPV+R++++M FA+IEK I  LAKKA DG +S+ +++GGTF+ISNGGVYGSLLSTPIINPPQS ILG+H    R + + G +  RPMMYIAL+YDHR+IDG+EAV FL +IK+++E P +LLL++
Sbjct:  236 ATIEALKLIPSVNAEIDGDDLVYKNYYDIGVAVGTEQGLVVPVVRDADKMGFADIEKTIGGLAKKARDGKLSMADLSGGTFSISNGGVYGSLLSTPIINPPQSGILGLHKTEERVVAIDGKIEIRPMMYIALSYDHRIIDGKEAVSFLVKIKELIESPEKLLLNL 400          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_ECOLI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Escherichia coli (strain K12) GN=sucB PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 5.563e-46
Identity = 92/165 (55.76%), Postives = 118/165 (71.52%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A V AL+  P VNA               S AV T +GLV PV+R+ + +  A+IEK+I  LA K  DG ++++++ GG FTI+NGGV+GSL+STPIINPPQSAILGMH+I +RPM V G V   PMMY+AL+YDHRLIDGRE+V FL  IK+++EDP RLLLD+
Sbjct:  241 AVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 405          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_ECO57 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Escherichia coli O157:H7 GN=sucB PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 5.563e-46
Identity = 92/165 (55.76%), Postives = 118/165 (71.52%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A V AL+  P VNA               S AV T +GLV PV+R+ + +  A+IEK+I  LA K  DG ++++++ GG FTI+NGGV+GSL+STPIINPPQSAILGMH+I +RPM V G V   PMMY+AL+YDHRLIDGRE+V FL  IK+++EDP RLLLD+
Sbjct:  241 AVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 405          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_RICCN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia conorii GN=sucB PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.619e-45
Identity = 89/165 (53.94%), Postives = 121/165 (73.33%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A + AL+  P VNA                 AVGT++GLVVPV+R++++M FAE+EK I  LAK+A +G +S+ +++GGTF+ISNGGVYGSLLSTPIINPPQS ILG+H    R +V+ G +  RPMMYIAL+YDHR+IDG+E V FL +IK ++E+P +LLL++
Sbjct:  231 ATIEALKLIPSVNAEIDGDDLVYKNYYDIGVAVGTEQGLVVPVVRDADKMGFAEVEKTIGILAKQAREGKLSMADLSGGTFSISNGGVYGSLLSTPIINPPQSGILGLHKTEERAVVIDGKIEIRPMMYIALSYDHRIIDGKEGVSFLVKIKQLIENPEKLLLNL 395          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_SCHPO (Probable dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC776.15c PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.114e-45
Identity = 85/134 (63.43%), Postives = 108/134 (80.60%), Query Frame = 2
Query:   89 SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            S AV T KGLV PVIRN+E M+  EIE  I+TL  KA  G ++I++MA GTFTISNGG++GSL  TPIIN PQ+A+LG+H+I  RP+V+ G VVPRPMMY+ALTYDHR++DGREAV FLR +K+ +EDP ++LL
Sbjct:  318 SIAVATPKGLVTPVIRNAESMSLLEIESAIATLGSKARAGKLAIEDMASGTFTISNGGIFGSLYGTPIINLPQTAVLGLHAIKERPVVINGQVVPRPMMYLALTYDHRMVDGREAVTFLRLVKEYIEDPAKMLL 451          
The following BLAST results are available for this feature:
BLAST of CX298072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
ODO2_BARQU1.014e-4756.36Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARVB3.853e-4755.76Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_RICFE6.571e-4755.15Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_RICTY3.261e-4654.55Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_RALEH3.261e-4654.55Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_RICBR4.259e-4655.15Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_ECOLI5.563e-4655.76Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_ECO575.563e-4655.76Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_RICCN1.619e-4553.94Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_SCHPO2.114e-4563.43Probable dihydrolipoyllysine-residue succinyltrans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06008C09SK RindPdig24 Citrus clementina cDNA clone C06008C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298072 ID=CX298072; Name=CX298072; organism=Citrus clementina; type=EST; length=774bp
AGCTGCTGTTAGTGCACTCCAGCATCAGCCAGTTGTTAATGCTGTCATTG
ATGGGGACGACATCATATATAGAGACTACATTGATATCAGCTTTGCTGTT
GGCACTAAAAAGGGTCTTGTTGTTCCGGTCATCCGCAACAGTGAGAGAAT
GAACTTTGCTGAGATAGAGAAGGAGATCAGCACTCTTGCTAAAAAGGCAA
ATGATGGTTCTATTTCAATTGATGAAATGGCTGGAGGCACATTCACAATA
TCTAATGGTGGTGTCTATGGAAGCCTTTTGAGTACACCAATTATTAATCC
TCCACAGTCTGCAATATTGGGCATGCACTCAATCGTGAACCGTCCAATGG
TTGTTGGAGGCAACGTCGTCCCAAGGCCAATGATGTATATTGCACTTACA
TATGATCATCGGCTGATCGATGGAAGAGAGGCTGTATTTTTCTTGCGCCG
GATCAAAGATATTGTGGAGGACCCTCGCAGGCTGCTCCTTGACATATGAA
GCCTTTGTCAATTCCTCGATTTACCTGGCACACTCAGATTGTGTAATTCG
TTTCTTAAGTACGTTTTTGGCCGGAATAAATCTAAAATTTTGTAGAGATA
TCTAAATTTTCCGGAGCTACCGGAGAAGAATACTGATCTTCATAAAATGC
TCTGGGTGTTTTGTGTTTTTGTAAAATCAGAGTGCAAATGCGTCATGCTT
CATTCCTTTATTGTATGGATACGCCTTCAGTAGCAGCCAACGCTATAAAA
GTCGCACGTTCTGCTCAAAAAAAA
back to top