CX298072

Overview
NameCX298072
Unique NameCX298072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_YEAST (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Saccharomyces cerevisiae GN=KGD2 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.606e-45
Identity = 86/163 (52.76%), Postives = 114/163 (69.94%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            A   A +  P VN                S AV T KGLV PV+RN+E ++  +IE EI  L+ KA DG +++++M GGTFTISNGGV+GSL  TPIIN PQ+A+LG+H +  RP+ V G +V RPMMY+ALTYDHRL+DGREAV FL+ +K+++EDPR++LL
Sbjct:  300 ACTLAAKDIPAVNGAIEGDQIVYRDYTDISVAVATPKGLVTPVVRNAESLSVLDIENEIVRLSHKARDGKLTLEDMTGGTFTISNGGVFGSLYGTPIINSPQTAVLGLHGVKERPVTVNGQIVSRPMMYLALTYDHRLLDGREAVTFLKTVKELIEDPRKMLL 462          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_RICPR (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia prowazekii GN=sucB PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.606e-45
Identity = 87/165 (52.73%), Postives = 121/165 (73.33%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A + AL+  P +NA                 AVGT +GLVVPV+R++++M FA++E+ I  LAKKA +G +S+ +++GGTF+ISNGGVYGSLLSTPIINPPQS ILG+H    R +V+ G +  RPMMYIAL+YDHR+IDG+E V FL +IK+++E+P +LLL++
Sbjct:  237 ATIEALKLIPSINAEIDGDDLLYKNYYDIGVAVGTDQGLVVPVVRDADKMGFADVEQAIGDLAKKAREGKLSMSDLSGGTFSISNGGVYGSLLSTPIINPPQSGILGLHKTEERAVVIDGKIEIRPMMYIALSYDHRIIDGKEGVSFLVKIKNLIENPEKLLLNL 401          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_STAS1 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=odhB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.519e-43
Identity = 86/165 (52.12%), Postives = 118/165 (71.52%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP-RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            AAV+AL+  P VNA                 AV T+ GL+VP +R+ ++ NFAEIE EI  LAKKA D  + +D+M  G+FTI+NGG++GS++STPIIN  Q+AILGMHSI+ RP+ +  + +  RPMMYIAL+YDHR+IDG+EAV FL+ IK+++E+P  LLL+
Sbjct:  259 AAVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTEDGLLVPFVRDCDKKNFAEIEDEIGNLAKKARDKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGSQAAILGMHSIITRPIAIDADTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 423          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_STAES (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 12228) GN=odhB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.873e-42
Identity = 86/165 (52.12%), Postives = 118/165 (71.52%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP-RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            AAV+AL+  P VNA                 AV T  GL+VP +R+ ++ NFAEIE+EI+ LA KA D  + +D+M  G+FTI+NGG++GS++STPIIN  Q+AILGMHSI+ RP+ V  + +  RPMMYIAL+YDHR+IDG+EAV FL+ IK+++E+P  LLL+
Sbjct:  255 AAVAALKKYPEVNAEIDGDDMITKQFYDIGIAVSTDDGLLVPFVRDCDKKNFAEIEQEIANLAVKARDKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAVDKDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 419          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_STAEQ (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=odhB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.873e-42
Identity = 86/165 (52.12%), Postives = 118/165 (71.52%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP-RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            AAV+AL+  P VNA                 AV T  GL+VP +R+ ++ NFAEIE+EI+ LA KA D  + +D+M  G+FTI+NGG++GS++STPIIN  Q+AILGMHSI+ RP+ V  + +  RPMMYIAL+YDHR+IDG+EAV FL+ IK+++E+P  LLL+
Sbjct:  255 AAVAALKKYPEVNAEIDGDDMITKQFYDIGIAVSTDDGLLVPFVRDCDKKNFAEIEQEIANLAVKARDKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAVDKDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 419          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_BUCAI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=sucB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.086e-41
Identity = 85/165 (51.52%), Postives = 113/165 (68.48%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A + AL++ P +NA               S A+ T +GL+ PVIRN++ M  AEIEK+I   + K     I+I E+ GG FTI+NGGV+GSL+STPIINPPQ+AILGMH I  RP+VV G +   PMMY+AL+YDHRLIDG+E+V FL  IK+I+ED  R+ +D+
Sbjct:  256 AVIQALKNFPEINAYIDQTDIVFYKNFDISIAISTPRGLITPVIRNADTMTMAEIEKKIKDFSIKGLQNKINIKELMGGNFTITNGGVFGSLMSTPIINPPQTAILGMHVIQERPVVVNGQIKILPMMYLALSYDHRLIDGKESVGFLINIKNILEDFNRIAIDV 420          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_BUCAP (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Buchnera aphidicola subsp. Schizaphis graminum GN=sucB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.388e-41
Identity = 82/165 (49.70%), Postives = 114/165 (69.09%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A V +L+  P +NA               S AV T +G++ PV+RN++ M+ A+IEK+I   + K  +  I I+E+ GG FTI+NGG++GSL+STPIINPPQSAILGMH I  RPM + G V   PMMY+AL+YDHRLIDG+E+V FL  IK+I+ED  R+++++
Sbjct:  229 AVVESLKKFPEINASIDKNDIVYYKNIDVSIAVSTPRGVITPVLRNADNMSMADIEKKIKEFSIKGIENKIKIEELIGGNFTITNGGIFGSLMSTPIINPPQSAILGMHLIKERPMAINGKVKILPMMYLALSYDHRLIDGKESVSFLVTIKNILEDFNRIIINV 393          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_STAHJ (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus haemolyticus (strain JCSC1435) GN=odhB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.037e-41
Identity = 84/165 (50.91%), Postives = 116/165 (70.30%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP-RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            AAV+AL+  P VNA                 AV T  GL+VP +R+ ++ NFAE+E+ I+ LA KA D  + +D+M  G+FTI+NGGV+GS++STPIIN  Q+AILGMHSI+ RP+ +  + +  RPMMYIAL+YDHR+IDG+EAV FL+ IK+++E P  LLL+
Sbjct:  258 AAVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAELERAIADLAVKARDKKLGLDDMVNGSFTITNGGVFGSMMSTPIINGNQAAILGMHSIITRPIAIDKDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIESPEDLLLE 422          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_STAAW (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MW2) GN=odhB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.191e-41
Identity = 83/165 (50.30%), Postives = 117/165 (70.91%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP-RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A+V+AL+  P VNA                 AV T  GL+VP +R+ ++ NFAEIE EI+ LA KA +  + +D+M  G+FTI+NGG++GS++STPIIN  Q+AILGMHSI+ RP+ +  + +  RPMMYIAL+YDHR+IDG+EAV FL+ IK+++E+P  LLL+
Sbjct:  257 ASVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 421          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_STAAS (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MSSA476) GN=odhB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.191e-41
Identity = 83/165 (50.30%), Postives = 117/165 (70.91%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP-RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A+V+AL+  P VNA                 AV T  GL+VP +R+ ++ NFAEIE EI+ LA KA +  + +D+M  G+FTI+NGG++GS++STPIIN  Q+AILGMHSI+ RP+ +  + +  RPMMYIAL+YDHR+IDG+EAV FL+ IK+++E+P  LLL+
Sbjct:  257 ASVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 421          
The following BLAST results are available for this feature:
BLAST of CX298072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
ODO2_YEAST3.606e-4552.76Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_RICPR3.606e-4552.73Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAS17.519e-4352.12Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAES4.873e-4252.12Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAEQ4.873e-4252.12Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BUCAI1.086e-4151.52Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BUCAP5.388e-4149.70Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAHJ7.037e-4150.91Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAW9.191e-4150.30Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAS9.191e-4150.30Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionC06008C09SK RindPdig24 Citrus clementina cDNA clone C06008C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298072 ID=CX298072; Name=CX298072; organism=Citrus clementina; type=EST; length=774bp
AGCTGCTGTTAGTGCACTCCAGCATCAGCCAGTTGTTAATGCTGTCATTG
ATGGGGACGACATCATATATAGAGACTACATTGATATCAGCTTTGCTGTT
GGCACTAAAAAGGGTCTTGTTGTTCCGGTCATCCGCAACAGTGAGAGAAT
GAACTTTGCTGAGATAGAGAAGGAGATCAGCACTCTTGCTAAAAAGGCAA
ATGATGGTTCTATTTCAATTGATGAAATGGCTGGAGGCACATTCACAATA
TCTAATGGTGGTGTCTATGGAAGCCTTTTGAGTACACCAATTATTAATCC
TCCACAGTCTGCAATATTGGGCATGCACTCAATCGTGAACCGTCCAATGG
TTGTTGGAGGCAACGTCGTCCCAAGGCCAATGATGTATATTGCACTTACA
TATGATCATCGGCTGATCGATGGAAGAGAGGCTGTATTTTTCTTGCGCCG
GATCAAAGATATTGTGGAGGACCCTCGCAGGCTGCTCCTTGACATATGAA
GCCTTTGTCAATTCCTCGATTTACCTGGCACACTCAGATTGTGTAATTCG
TTTCTTAAGTACGTTTTTGGCCGGAATAAATCTAAAATTTTGTAGAGATA
TCTAAATTTTCCGGAGCTACCGGAGAAGAATACTGATCTTCATAAAATGC
TCTGGGTGTTTTGTGTTTTTGTAAAATCAGAGTGCAAATGCGTCATGCTT
CATTCCTTTATTGTATGGATACGCCTTCAGTAGCAGCCAACGCTATAAAA
GTCGCACGTTCTGCTCAAAAAAAA
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