CX298072

Overview
NameCX298072
Unique NameCX298072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_STAAR (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MRSA252) GN=odhB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.191e-41
Identity = 83/165 (50.30%), Postives = 117/165 (70.91%), Query Frame = 2 
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP-RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A+V+AL+  P VNA                 AV T  GL+VP +R+ ++ NFAEIE EI+ LA KA +  + +D+M  G+FTI+NGG++GS++STPIIN  Q+AILGMHSI+ RP+ +  + +  RPMMYIAL+YDHR+IDG+EAV FL+ IK+++E+P  LLL+
Sbjct:  258 ASVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 422
[Close]
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_STAAN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain N315) GN=odhB PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.191e-41
Identity = 83/165 (50.30%), Postives = 117/165 (70.91%), Query Frame = 2 
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP-RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A+V+AL+  P VNA                 AV T  GL+VP +R+ ++ NFAEIE EI+ LA KA +  + +D+M  G+FTI+NGG++GS++STPIIN  Q+AILGMHSI+ RP+ +  + +  RPMMYIAL+YDHR+IDG+EAV FL+ IK+++E+P  LLL+
Sbjct:  257 ASVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 421
[Close]
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_STAAM (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=odhB PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.191e-41
Identity = 83/165 (50.30%), Postives = 117/165 (70.91%), Query Frame = 2 
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP-RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A+V+AL+  P VNA                 AV T  GL+VP +R+ ++ NFAEIE EI+ LA KA +  + +D+M  G+FTI+NGG++GS++STPIIN  Q+AILGMHSI+ RP+ +  + +  RPMMYIAL+YDHR+IDG+EAV FL+ IK+++E+P  LLL+
Sbjct:  257 ASVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 421
[Close]
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_STAAC (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain COL) GN=odhB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.191e-41
Identity = 83/165 (50.30%), Postives = 117/165 (70.91%), Query Frame = 2 
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP-RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A+V+AL+  P VNA                 AV T  GL+VP +R+ ++ NFAEIE EI+ LA KA +  + +D+M  G+FTI+NGG++GS++STPIIN  Q+AILGMHSI+ RP+ +  + +  RPMMYIAL+YDHR+IDG+EAV FL+ IK+++E+P  LLL+
Sbjct:  257 ASVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 421
[Close]
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_STAAB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=odhB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.191e-41
Identity = 83/165 (50.30%), Postives = 117/165 (70.91%), Query Frame = 2 
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP-RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A+V+AL+  P VNA                 AV T  GL+VP +R+ ++ NFAEIE EI+ LA KA +  + +D+M  G+FTI+NGG++GS++STPIIN  Q+AILGMHSI+ RP+ +  + +  RPMMYIAL+YDHR+IDG+EAV FL+ IK+++E+P  LLL+
Sbjct:  257 ASVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 421
[Close]
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_STAA8 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain NCTC 8325) GN=odhB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.191e-41
Identity = 83/165 (50.30%), Postives = 117/165 (70.91%), Query Frame = 2 
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP-RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A+V+AL+  P VNA                 AV T  GL+VP +R+ ++ NFAEIE EI+ LA KA +  + +D+M  G+FTI+NGG++GS++STPIIN  Q+AILGMHSI+ RP+ +  + +  RPMMYIAL+YDHR+IDG+EAV FL+ IK+++E+P  LLL+
Sbjct:  257 ASVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 421
[Close]
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_STAA3 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain USA300) GN=odhB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.191e-41
Identity = 83/165 (50.30%), Postives = 117/165 (70.91%), Query Frame = 2 
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP-RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A+V+AL+  P VNA                 AV T  GL+VP +R+ ++ NFAEIE EI+ LA KA +  + +D+M  G+FTI+NGG++GS++STPIIN  Q+AILGMHSI+ RP+ +  + +  RPMMYIAL+YDHR+IDG+EAV FL+ IK+++E+P  LLL+
Sbjct:  257 ASVAALKKYPEVNAEIDGDDMITKQYYDIGVAVSTDDGLLVPFVRDCDKKNFAEIEAEIANLAVKAREKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAILGMHSIITRPIAIDQDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLE 421
[Close]
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_BUCBP (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sucB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.191e-41
Identity = 81/165 (49.09%), Postives = 116/165 (70.30%), Query Frame = 2 
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A + AL+  P +NA               S A+ T +GLV PV++N++ M+ AEIE +I   ++K  +  ++ID++ GG FTI+NGGV+GSL STP+INPPQSAILGMH+I  RP++V  N+   PMMY+AL+YDHRLIDG+E+V FL +IK+ +ED  R++L+I
Sbjct:  246 AVIEALKIFPEINASIDNDEIIYYNYFDISIAISTPRGLVTPVLKNADLMSMAEIEIKIKDFSEKGKNSKLTIDDLIGGNFTITNGGVFGSLFSTPLINPPQSAILGMHAIHKRPVIVDENIEVHPMMYLALSYDHRLIDGKESVGFLLKIKEFLEDFSRIVLNI 410
[Close]
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_BACSU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bacillus subtilis GN=odhB PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.016e-39
Identity = 83/165 (50.30%), Postives = 114/165 (69.09%), Query Frame = 2 
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVG-GNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A V+AL+  P++NA                 AV   +GLVVPV+R+++R+ FA IEKEI  LAKKA +  +++ E+ GG+FTI+NGG +GSL+STPI+N PQ  ILGMH I  RP+ +       RPMMYIAL+YDHR++DG+EAV FL  IK+++EDP +LLL+
Sbjct:  252 AVVAALKKYPLLNAEIQGDELIVKKFYDIGIAVAADEGLVVPVVRDADRLTFAGIEKEIGELAKKARNNKLTLSELQGGSFTITNGGTFGSLMSTPILNSPQVGILGMHKIQLRPVAIDEERFENRPMMYIALSYDHRIVDGKEAVGFLVTIKNLLEDPEQLLLE 416
[Close]
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ACOC_BACSU (Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system OS=Bacillus subtilis GN=acoC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.683e-26
Identity = 63/163 (38.65%), Postives = 97/163 (59.51%), Query Frame = 2 
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            AAV ALQ  PV+N+                 AV  + GLVVPVIR++E+++  E+ + IS  AKKA +G    +E+ G TF+I+N G +G    TPI+NPP++ ILG+ +  + P+  G  +V   ++ ++LT+DHR  DG  A  FL+ +K  +E+P  L+L
Sbjct:  236 AAVLALQAHPVLNSFYQNERIITHPHVHLGMAVALENGLVVPVIRHAEKLSLIELAQSISENAKKAREGRAGSEELQGSTFSITNLGAFGVEHFTPILNPPETGILGIGASYDTPVYQGEEIVRSTILPLSLTFDHRACDGAPAAAFLKAMKTYLEEPAALIL 398
The following BLAST results are available for this feature:
BLAST of CX298072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
ODO2_STAAR9.191e-4150.30Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAN9.191e-4150.30Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAM9.191e-4150.30Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAC9.191e-4150.30Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAB9.191e-4150.30Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAA89.191e-4150.30Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAA39.191e-4150.30Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BUCBP9.191e-4149.09Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BACSU1.016e-3950.30Dihydrolipoyllysine-residue succinyltransferase co... [more]
ACOC_BACSU1.683e-2638.65Dihydrolipoyllysine-residue acetyltransferase comp... [more]

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Properties
Property NameValue
Genbank descriptionC06008C09SK RindPdig24 Citrus clementina cDNA clone C06008C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298072 ID=CX298072; Name=CX298072; organism=Citrus clementina; type=EST; length=774bp
AGCTGCTGTTAGTGCACTCCAGCATCAGCCAGTTGTTAATGCTGTCATTG
ATGGGGACGACATCATATATAGAGACTACATTGATATCAGCTTTGCTGTT
GGCACTAAAAAGGGTCTTGTTGTTCCGGTCATCCGCAACAGTGAGAGAAT
GAACTTTGCTGAGATAGAGAAGGAGATCAGCACTCTTGCTAAAAAGGCAA
ATGATGGTTCTATTTCAATTGATGAAATGGCTGGAGGCACATTCACAATA
TCTAATGGTGGTGTCTATGGAAGCCTTTTGAGTACACCAATTATTAATCC
TCCACAGTCTGCAATATTGGGCATGCACTCAATCGTGAACCGTCCAATGG
TTGTTGGAGGCAACGTCGTCCCAAGGCCAATGATGTATATTGCACTTACA
TATGATCATCGGCTGATCGATGGAAGAGAGGCTGTATTTTTCTTGCGCCG
GATCAAAGATATTGTGGAGGACCCTCGCAGGCTGCTCCTTGACATATGAA
GCCTTTGTCAATTCCTCGATTTACCTGGCACACTCAGATTGTGTAATTCG
TTTCTTAAGTACGTTTTTGGCCGGAATAAATCTAAAATTTTGTAGAGATA
TCTAAATTTTCCGGAGCTACCGGAGAAGAATACTGATCTTCATAAAATGC
TCTGGGTGTTTTGTGTTTTTGTAAAATCAGAGTGCAAATGCGTCATGCTT
CATTCCTTTATTGTATGGATACGCCTTCAGTAGCAGCCAACGCTATAAAA
GTCGCACGTTCTGCTCAAAAAAAA
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