CX298072

Overview
NameCX298072
Unique NameCX298072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODB2_PSEAE (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex OS=Pseudomonas aeruginosa GN=bkdB PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.896e-26
Identity = 62/166 (37.35%), Postives = 100/166 (60.24%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKK--GLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A V AL+  P +NA                  + T+   GL+VPV+R++E  +      E++ LA+ A  G     E++G T T+S+ GV G ++STP+IN P+ AI+G++ IV RPMVVGGN+V R MM ++ ++DHR++DG +A  F++ ++ ++E P  L L+
Sbjct:  263 AMVVALRDFPQLNARYDDEAEVVTRYGAVHVGIATQSDNGLMVPVLRHAESRDLWGNASEVARLAEAARSGKAQRQELSGSTITLSSLGVLGGIVSTPVINHPEVAIVGVNRIVERPMVVGGNIVVRKMMNLSSSFDHRVVDGMDAAAFIQAVRGLLEHPATLFLE 428          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODB2_BACSU (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex OS=Bacillus subtilis GN=bfmBB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 65/157 (41.40%), Postives = 94/157 (59.87%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVE 469
            A   AL+  P +N++              S AV T+  L VPVI+N++      I K+I+ LAKK  DG ++ D+M GGTFT++N G +GS+ S  IIN PQ+AIL + SIV RP+V+  G +  R M+ + L+ DHR++DG     FL R+K I+E
Sbjct:  259 AVAQALKEFPQMNSMWAGDKIIQKKDINISIAVATEDSLFVPVIKNADEKTIKGIAKDITGLAKKVRDGKLTADDMQGGTFTVNNTGSFGSVQSMGIINYPQAAILQVESIVKRPVVMDNGMIAVRDMVNLCLSLDHRVLDGLVCGRFLGRVKQILE 415          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_BACST (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Bacillus stearothermophilus GN=pdhC PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25
Identity = 63/166 (37.95%), Postives = 97/166 (58.43%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVG--TKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A VSAL+  PV+N                +  +   T +GL+VPVI++++R     + +EI+ LA+KA DG ++  EM G + TI+N G  G    TP+IN P+ AILG+  I  +P+V  G +V  PM+ ++L++DHR+IDG  A   L  IK ++ DP  LL++
Sbjct:  262 ALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLME 427          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_STAES (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.057e-24
Identity = 62/166 (37.35%), Postives = 95/166 (57.23%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVG--TKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A VSAL+  P +N                +  +   T KGL+VPV+++++R +  EI  EI+ LA KA DG ++ +EM G T TISN G  G    TP+IN P+ AILG+  I  +P+V  G +V  P++ ++L++DHR IDG      +  IK ++ +P  LL++
Sbjct:  267 ALVSALKKYPALNTSFNEEAGEVVHKHYWNIGIAADTDKGLLVPVVKHADRKSIFEISDEINELAVKARDGKLTSEEMKGATCTISNIGSAGGQWFTPVINHPEVAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLLME 432          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_STAEQ (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.057e-24
Identity = 62/166 (37.35%), Postives = 95/166 (57.23%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVG--TKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A VSAL+  P +N                +  +   T KGL+VPV+++++R +  EI  EI+ LA KA DG ++ +EM G T TISN G  G    TP+IN P+ AILG+  I  +P+V  G +V  P++ ++L++DHR IDG      +  IK ++ +P  LL++
Sbjct:  267 ALVSALKKYPALNTSFNEEAGEVVHKHYWNIGIAADTDKGLLVPVVKHADRKSIFEISDEINELAVKARDGKLTSEEMKGATCTISNIGSAGGQWFTPVINHPEVAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLLME 432          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_STAAW (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain MW2) GN=pdhC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.687e-24
Identity = 61/166 (36.75%), Postives = 95/166 (57.23%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVG--TKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A VSAL+  P +N                +  +   T +GL+VPV+++++R +  +I  EI+ LA KA DG ++ DEM G T TISN G  G    TP+IN P+ AILG+  I  +P+V  G +V  P++ ++L++DHR IDG      +  IK ++ +P  LL++
Sbjct:  264 ALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDRGLLVPVVKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPVINHPEVAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLLME 429          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_STAAU (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus GN=pdhC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.687e-24
Identity = 61/166 (36.75%), Postives = 95/166 (57.23%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVG--TKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A VSAL+  P +N                +  +   T +GL+VPV+++++R +  +I  EI+ LA KA DG ++ DEM G T TISN G  G    TP+IN P+ AILG+  I  +P+V  G +V  P++ ++L++DHR IDG      +  IK ++ +P  LL++
Sbjct:  264 ALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDRGLLVPVVKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPVINHPEVAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLLME 429          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_STAAS (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain MSSA476) GN=pdhC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.687e-24
Identity = 61/166 (36.75%), Postives = 95/166 (57.23%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVG--TKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A VSAL+  P +N                +  +   T +GL+VPV+++++R +  +I  EI+ LA KA DG ++ DEM G T TISN G  G    TP+IN P+ AILG+  I  +P+V  G +V  P++ ++L++DHR IDG      +  IK ++ +P  LL++
Sbjct:  264 ALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDRGLLVPVVKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPVINHPEVAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLLME 429          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_STAAR (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain MRSA252) GN=pdhC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.687e-24
Identity = 61/166 (36.75%), Postives = 95/166 (57.23%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVG--TKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A VSAL+  P +N                +  +   T +GL+VPV+++++R +  +I  EI+ LA KA DG ++ DEM G T TISN G  G    TP+IN P+ AILG+  I  +P+V  G +V  P++ ++L++DHR IDG      +  IK ++ +P  LL++
Sbjct:  264 ALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDRGLLVPVVKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPVINHPEVAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLLME 429          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_STAAN (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain N315) GN=pdhC PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.687e-24
Identity = 61/166 (36.75%), Postives = 95/166 (57.23%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVG--TKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A VSAL+  P +N                +  +   T +GL+VPV+++++R +  +I  EI+ LA KA DG ++ DEM G T TISN G  G    TP+IN P+ AILG+  I  +P+V  G +V  P++ ++L++DHR IDG      +  IK ++ +P  LL++
Sbjct:  264 ALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDRGLLVPVVKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPVINHPEVAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLLME 429          
The following BLAST results are available for this feature:
BLAST of CX298072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
ODB2_PSEAE4.896e-2637.35Lipoamide acyltransferase component of branched-ch... [more]
ODB2_BACSU8.352e-2641.40Lipoamide acyltransferase component of branched-ch... [more]
ODP2_BACST9.234e-2537.95Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_STAES2.057e-2437.35Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_STAEQ2.057e-2437.35Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_STAAW2.687e-2436.75Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_STAAU2.687e-2436.75Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_STAAS2.687e-2436.75Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_STAAR2.687e-2436.75Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_STAAN2.687e-2436.75Dihydrolipoyllysine-residue acetyltransferase comp... [more]

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Properties
Property NameValue
Genbank descriptionC06008C09SK RindPdig24 Citrus clementina cDNA clone C06008C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298072 ID=CX298072; Name=CX298072; organism=Citrus clementina; type=EST; length=774bp
AGCTGCTGTTAGTGCACTCCAGCATCAGCCAGTTGTTAATGCTGTCATTG
ATGGGGACGACATCATATATAGAGACTACATTGATATCAGCTTTGCTGTT
GGCACTAAAAAGGGTCTTGTTGTTCCGGTCATCCGCAACAGTGAGAGAAT
GAACTTTGCTGAGATAGAGAAGGAGATCAGCACTCTTGCTAAAAAGGCAA
ATGATGGTTCTATTTCAATTGATGAAATGGCTGGAGGCACATTCACAATA
TCTAATGGTGGTGTCTATGGAAGCCTTTTGAGTACACCAATTATTAATCC
TCCACAGTCTGCAATATTGGGCATGCACTCAATCGTGAACCGTCCAATGG
TTGTTGGAGGCAACGTCGTCCCAAGGCCAATGATGTATATTGCACTTACA
TATGATCATCGGCTGATCGATGGAAGAGAGGCTGTATTTTTCTTGCGCCG
GATCAAAGATATTGTGGAGGACCCTCGCAGGCTGCTCCTTGACATATGAA
GCCTTTGTCAATTCCTCGATTTACCTGGCACACTCAGATTGTGTAATTCG
TTTCTTAAGTACGTTTTTGGCCGGAATAAATCTAAAATTTTGTAGAGATA
TCTAAATTTTCCGGAGCTACCGGAGAAGAATACTGATCTTCATAAAATGC
TCTGGGTGTTTTGTGTTTTTGTAAAATCAGAGTGCAAATGCGTCATGCTT
CATTCCTTTATTGTATGGATACGCCTTCAGTAGCAGCCAACGCTATAAAA
GTCGCACGTTCTGCTCAAAAAAAA
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