CX298072

Overview
NameCX298072
Unique NameCX298072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_STAAM (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhC PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.687e-24
Identity = 61/166 (36.75%), Postives = 95/166 (57.23%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVG--TKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A VSAL+  P +N                +  +   T +GL+VPV+++++R +  +I  EI+ LA KA DG ++ DEM G T TISN G  G    TP+IN P+ AILG+  I  +P+V  G +V  P++ ++L++DHR IDG      +  IK ++ +P  LL++
Sbjct:  264 ALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDRGLLVPVVKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPVINHPEVAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLLME 429          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_STAAC (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain COL) GN=pdhC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.687e-24
Identity = 61/166 (36.75%), Postives = 95/166 (57.23%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVG--TKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A VSAL+  P +N                +  +   T +GL+VPV+++++R +  +I  EI+ LA KA DG ++ DEM G T TISN G  G    TP+IN P+ AILG+  I  +P+V  G +V  P++ ++L++DHR IDG      +  IK ++ +P  LL++
Sbjct:  264 ALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDRGLLVPVVKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPVINHPEVAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLLME 429          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_MYCTU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium tuberculosis GN=sucB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.509e-24
Identity = 67/164 (40.85%), Postives = 98/164 (59.76%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXX--SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV---GGN--VVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVED 472
            A + AL+  P +NA                  FAV T++GL+ PVI ++  ++ A + + I+ +A +A  G++  DE++GGTFTI+N G  G+L  TPI+ PPQ+A+LG  +IV RP VV    GN  +  R + Y+ LTYDHRLIDG +A  FL  IK  +E+
Sbjct:  381 AVIDALKIHPNINASYNEDTKEITYYDAEHLGFAVDTEQGLLSPVIHDAGDLSLAGLARAIADIAARARSGNLKPDELSGGTFTITNIGSQGALFDTPILVPPQAAMLGTGAIVKRPRVVVDASGNESIGVRSVCYLPLTYDHRLIDGADAGRFLTTIKHRLEE 544          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_MYCBO (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium bovis GN=sucB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.509e-24
Identity = 67/164 (40.85%), Postives = 98/164 (59.76%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXX--SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV---GGN--VVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVED 472
            A + AL+  P +NA                  FAV T++GL+ PVI ++  ++ A + + I+ +A +A  G++  DE++GGTFTI+N G  G+L  TPI+ PPQ+A+LG  +IV RP VV    GN  +  R + Y+ LTYDHRLIDG +A  FL  IK  +E+
Sbjct:  381 AVIDALKIHPNINASYNEDTKEITYYDAEHLGFAVDTEQGLLSPVIHDAGDLSLAGLARAIADIAARARSGNLKPDELSGGTFTITNIGSQGALFDTPILVPPQAAMLGTGAIVKRPRVVVDASGNESIGVRSVCYLPLTYDHRLIDGADAGRFLTTIKHRLEE 544          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_RALEH (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=pdhB PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.817e-24
Identity = 64/163 (39.26%), Postives = 91/163 (55.83%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            A V+AL+  P  NA                FA  T  GLVVPVI+++++    EI +E+S LAK A DG +  D+M GG F+IS+ G  G    TPIIN P+ AI+G+     +P+  G    PR  + ++L++DHR+IDG EA  F      ++ D RR+LL
Sbjct:  391 ATVAALKKFPNFNASLDGDNLVLKKYFNIGFAADTPNGLVVPVIKDADKKGVLEISQEMSELAKLARDGKLKPDQMQGGCFSISSLGGLGGTYFTPIINAPEVAIMGVCKSYQKPVWDGKQFAPRLTLPLSLSWDHRVIDGAEAARFNTYFGQLLADFRRILL 553          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_BACSU (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Bacillus subtilis GN=pdhC PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.333e-23
Identity = 61/166 (36.75%), Postives = 97/166 (58.43%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVG--TKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A  SAL+  PV+N                +  +   T+KGL+VPV++N++R +  EI  EI+ LA KA +G ++  EM G + TI+N G  G    TP+IN P+ AILG+  I  + +V  G +V  P++ ++L++DHR+IDG  A   L  IK ++ DP+ +L++
Sbjct:  276 ALTSALKKFPVLNTSIDDKTDEVIQKHYFNIGIAADTEKGLLVPVVKNADRKSVFEISDEINGLATKAREGKLAPAEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKAIVRDGEIVAAPVLALSLSFDHRMIDGATAQNALNHIKRLLNDPQLILME 441          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_RICFE (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia felis GN=pdhC PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.970e-23
Identity = 59/163 (36.20%), Postives = 84/163 (51.53%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            A   ALQ  P  NA               S AV  + GLV P+++N+ + N  E+ +E+  L KKA D  ++ +E  GG FTISN G+YG      IINPPQS I+G+ +   R +V    V    +M + L+ DHR++DG     FL   K  +E P  +L+
Sbjct:  250 AVAKALQELPNANASWGEDAIRYHNNVDISVAVAIENGLVTPIVKNANQKNIIELSREMKELIKKAKDNKLTPEEFQGGGFTISNLGMYGIKNFNAIINPPQSCIMGVGASAKRAIVKNDQVTIATIMDVTLSADHRVVDGAVGAEFLAAFKKFIESPALMLI 412          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODB2_PSEPU (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex OS=Pseudomonas putida GN=bkdB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.970e-23
Identity = 55/166 (33.13%), Postives = 98/166 (59.04%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTK--KGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLD 493
            A V AL+  P +NA                  + T+   GL+VPV+R++E  +      EIS LA  A +   S +E++G T T+++ G  G ++STP++N P+ AI+G++ +V RP+V+ G +V R MM ++ ++DHR++DG +A  F++ ++ ++E P  L ++
Sbjct:  258 ALVVALRDFPQINATYDDEAQIITRHGAVHVGIATQGDNGLMVPVLRHAEAGSLWANAGEISRLANAARNNKASREELSGSTITLTSLGALGGIVSTPVVNTPEVAIVGVNRMVERPVVIDGQIVVRKMMNLSSSFDHRVVDGMDAALFIQAVRGLLEQPACLFVE 423          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_ECOLI (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Escherichia coli (strain K12) GN=aceF PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 6.617e-23
Identity = 55/132 (41.67%), Postives = 82/132 (62.12%), Query Frame = 2
Query:   95 AVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            AV T  GLVVPV ++  +    E+ +E+ T++KKA DG ++  EM GG FTIS+ G  G+    PI+N P+ AILG+      P+  G   VPR M+ I+L++DHR+IDG +   F+  I + + D RRL++
Sbjct:  499 AVDTPNGLVVPVFKDVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSAMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSDIRRLVM 630          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_RICCN (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia conorii GN=pdhC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.642e-23
Identity = 58/163 (35.58%), Postives = 84/163 (51.53%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            A   ALQ  P  NA               S AV  + GLV P+++N+ + N  E+ +E+  L KKA D  ++ +E  GG FTISN G+YG      IINPPQS I+G+ +   R +V    +    +M + L+ DHR++DG     FL   K  +E P  +L+
Sbjct:  250 AVAKALQEVPNANASWGEDAIRYYNNVDISVAVAIENGLVTPIVKNANQKNILELSREMKALIKKAKDNKLTPEEFQGGGFTISNLGMYGIKNFNAIINPPQSCIMGVGASAKRAIVKNDQITIATIMDVTLSADHRVVDGAVGAEFLVAFKKFIESPVLMLI 412          
The following BLAST results are available for this feature:
BLAST of CX298072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
ODP2_STAAM2.687e-2436.75Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_STAAC2.687e-2436.75Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODO2_MYCTU3.509e-2440.85Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_MYCBO3.509e-2440.85Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODP2_RALEH7.817e-2439.26Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_BACSU1.333e-2336.75Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICFE2.970e-2336.20Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODB2_PSEPU2.970e-2333.13Lipoamide acyltransferase component of branched-ch... [more]
ODP2_ECOLI6.617e-2341.67Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICCN8.642e-2335.58Dihydrolipoyllysine-residue acetyltransferase comp... [more]

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Properties
Property NameValue
Genbank descriptionC06008C09SK RindPdig24 Citrus clementina cDNA clone C06008C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298072 ID=CX298072; Name=CX298072; organism=Citrus clementina; type=EST; length=774bp
AGCTGCTGTTAGTGCACTCCAGCATCAGCCAGTTGTTAATGCTGTCATTG
ATGGGGACGACATCATATATAGAGACTACATTGATATCAGCTTTGCTGTT
GGCACTAAAAAGGGTCTTGTTGTTCCGGTCATCCGCAACAGTGAGAGAAT
GAACTTTGCTGAGATAGAGAAGGAGATCAGCACTCTTGCTAAAAAGGCAA
ATGATGGTTCTATTTCAATTGATGAAATGGCTGGAGGCACATTCACAATA
TCTAATGGTGGTGTCTATGGAAGCCTTTTGAGTACACCAATTATTAATCC
TCCACAGTCTGCAATATTGGGCATGCACTCAATCGTGAACCGTCCAATGG
TTGTTGGAGGCAACGTCGTCCCAAGGCCAATGATGTATATTGCACTTACA
TATGATCATCGGCTGATCGATGGAAGAGAGGCTGTATTTTTCTTGCGCCG
GATCAAAGATATTGTGGAGGACCCTCGCAGGCTGCTCCTTGACATATGAA
GCCTTTGTCAATTCCTCGATTTACCTGGCACACTCAGATTGTGTAATTCG
TTTCTTAAGTACGTTTTTGGCCGGAATAAATCTAAAATTTTGTAGAGATA
TCTAAATTTTCCGGAGCTACCGGAGAAGAATACTGATCTTCATAAAATGC
TCTGGGTGTTTTGTGTTTTTGTAAAATCAGAGTGCAAATGCGTCATGCTT
CATTCCTTTATTGTATGGATACGCCTTCAGTAGCAGCCAACGCTATAAAA
GTCGCACGTTCTGCTCAAAAAAAA
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