CX298072

Overview
NameCX298072
Unique NameCX298072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_RICBR (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.642e-23
Identity = 60/163 (36.81%), Postives = 84/163 (51.53%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            A   ALQ  P  NA               S AV  + GLV P+IRN+++ N  ++  E+  L KKA +  ++ +E  GG FTISN G+YG      IINPPQS I+G+ S   R +V    +    +M + L+ DHR++DG     FL   K  +E P  +LL
Sbjct:  253 AVAKALQEVPNANASWGDDAIRYYNNVDISVAVAIENGLVTPIIRNADQKNIVDLSSEMKGLIKKARENKLTPEEFQGGGFTISNLGMYGIKNFNAIINPPQSCIMGVGSSSKRAIVKNDQISIATIMDVTLSADHRVVDGAVGAEFLAAFKRFIESPALMLL 415          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_MYCCT (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=pdhC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.129e-22
Identity = 56/132 (42.42%), Postives = 85/132 (64.39%), Query Frame = 2
Query:   95 AVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            AV T  GL+VPVI+ ++ ++  EI  +IS LA KA DG ++  EM   TFT+SN G  G   +TPIIN P+SAILG+ ++   P+ + G +  R +M +++T DHR+IDG +A  FL +++D +  P  L +
Sbjct:  307 AVDTPNGLMVPVIKGADHLSVFEIAIKISELANKAKDGKLTRAEMTEATFTVSNFGSVGLDYATPIINSPESAILGVGTMSQTPLYINGELQKRFIMPLSMTCDHRIIDGADAGRFLIKVQDYLSKPVLLFM 438          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_ACHLA (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Acholeplasma laidlawii GN=pdhC PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.284e-22
Identity = 54/132 (40.91%), Postives = 82/132 (62.12%), Query Frame = 2
Query:   95 AVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            AV T  GL+VP I+N++R++  E+  ++ +LA       IS+D+  GGTFTI+N G  G    TP+IN P+ AILG+  I  +P VVG  +     + ++L  DHR+IDG +   FL R+K+++ +P  LLL
Sbjct:  412 AVDTPDGLIVPNIKNADRLSVFELASQVRSLADDTIARKISMDQQTGGTFTITNFGSAGIAFGTPVINYPELAILGIGKIDRKPWVVGNEIKIAHTLPLSLAVDHRIIDGADGGRFLMRVKELLTNPTLLLL 543          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_RICPR (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia prowazekii GN=pdhC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.602e-22
Identity = 57/163 (34.97%), Postives = 86/163 (52.76%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            A   ALQ  P  NA               S AV  + G+V P+++++ + N  E+ +E+ TL KKA D  ++  E  GG FTISN G+YG      IIN PQS I+G+ +   R +V    ++   +M + L+ DHR+IDG  +  FL   K  +E+P  +L+
Sbjct:  246 AVAKALQEVPNANASWSEDAIRYYNNVDISVAVAIENGIVTPIVKDANKKNIIELSREMKTLIKKAKDNKLTPIEFQGGGFTISNLGMYGIKNFNAIINTPQSCIMGVGASTKRAIVKNDQIIIATIMDVTLSADHRVIDGAVSAEFLASFKRFIENPVLMLI 408          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_AZOVI (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Azotobacter vinelandii PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 2.129e-21
Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = 2
Query:   92 FAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            FAV T  GL+VPVIRN ++ +  ++  E + LA+KA    +  D M G  FTIS+ G  G    TPI+N P+ AILG+     +P+  G    PR M+ ++L+YDHR+I+G  A  F +R+ D++ D R +LL
Sbjct:  506 FAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL 638          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_PSEAE (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Pseudomonas aeruginosa GN=aceF PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.780e-21
Identity = 56/133 (42.11%), Postives = 82/133 (61.65%), Query Frame = 2
Query:   92 FAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            FAV T  GL+VPVIR+ +R +  ++  E + LA KA +  +S D M G  FTIS+ G  G    TPI+N P+ AILG+     +P+  G    PR M+ ++L+YDHR+I+G  A  F +R+ +++ D R LLL
Sbjct:  415 FAVDTPDGLLVPVIRDVDRKSLLQLAAEAADLADKARNKKLSADAMQGACFTISSLGHIGGTGFTPIVNAPEVAILGVSKATMQPVWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGELLADIRTLLL 547          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_RICTY (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia typhi GN=pdhC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.089e-21
Identity = 57/163 (34.97%), Postives = 83/163 (50.92%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            A   ALQ  P  NA               S AV  + G+V P+I+++ + N  E+  E+  L KKA D  ++  E  GG FTISN G+YG      IIN PQS I+G+ +   R +V    ++   +M + L+ DHR+IDG  +  FL   K  +E P  +L+
Sbjct:  242 AVAKALQEVPNANASWAEDAIRYYNNVDISVAVAIENGIVTPIIKDANKKNIIELSHEMKILIKKAKDNKLTPVEFQGGGFTISNLGMYGIKNFNAIINTPQSCIMGVGASTKRAIVKNDQIIIATIMDVTLSADHRVIDGAVSAEFLASFKRFIEHPVLMLI 404          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_LEIXX (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Leifsonia xyli subsp. xyli GN=pdhC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 54/162 (33.33%), Postives = 85/162 (52.47%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLL 487
            A V A++  P VN+                 A  T +GL+VP ++ ++ M+  E+   +  L   A +G     +MA GT TI+N GV+G    TPI+NP +  I+ + +I  +P VV G V PR +  +  ++DHR++DG  A  FL  +  I+E+P  LL
Sbjct:  290 AIVWAVRRNPTVNSTWTDEEIIVRHYVNLGIAAATPRGLIVPNVKEAQGMSLLELAGALEELTLTAREGKTQPADMANGTITITNIGVFGMDTGTPILNPGEVGIVALGTIKQKPWVVDGEVRPRFVTTLGGSFDHRVVDGDVASRFLADVASIIEEPALLL 451          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_HAEIN (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Haemophilus influenzae GN=aceF PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 49/132 (37.12%), Postives = 80/132 (60.61%), Query Frame = 2
Query:   95 AVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            AV T  GLVVPV +N  +    E+ +E+  ++KKA +G ++  +M GG FTIS+ G  G+    PI+N P+ AILG+      P+  G    PR ++ ++L++DHR+IDG +   F+  +  ++ D RRL++
Sbjct:  436 AVDTPNGLVVPVFKNVNKKGIIELSRELMEVSKKAREGKLTASDMQGGCFTISSLGGIGTTHFAPIVNAPEVAILGVSKSSMEPVWNGKEFAPRLILPMSLSFDHRVIDGADGARFISYLGSVLADLRRLVM 567          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_BUCAP (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Buchnera aphidicola subsp. Schizaphis graminum GN=aceF PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.168e-19
Identity = 53/133 (39.85%), Postives = 83/133 (62.41%), Query Frame = 2
Query:   95 AVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISN-GGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            AV  +  L VPV++N ++ N A +  E+  L+KKA++  +   +M  G FTISN GG+ GS  S PIIN P+ AILG+   + +P+  G   +P  M+ ++L+YDHR+I+G +A  FL  I  ++ D R L++
Sbjct:  271 AVDVQNALFVPVLKNVDKKNIANLSSELIFLSKKAHENKLDASDMKDGCFTISNLGGIGGSWFS-PIINSPEVAILGVSKALIKPLWNGKEFIPSLMLPLSLSYDHRVINGADAARFLTFIGKMLSDIRFLIM 402          
The following BLAST results are available for this feature:
BLAST of CX298072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
ODP2_RICBR8.642e-2336.81Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_MYCCT1.129e-2242.42Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_ACHLA3.284e-2240.91Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICPR5.602e-2234.97Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_AZOVI2.129e-2141.35Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_PSEAE2.780e-2142.11Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICTY8.089e-2134.97Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_LEIXX2.354e-2033.33Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_HAEIN2.354e-2037.12Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_BUCAP1.168e-1939.85Dihydrolipoyllysine-residue acetyltransferase comp... [more]

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Properties
Property NameValue
Genbank descriptionC06008C09SK RindPdig24 Citrus clementina cDNA clone C06008C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298072 ID=CX298072; Name=CX298072; organism=Citrus clementina; type=EST; length=774bp
AGCTGCTGTTAGTGCACTCCAGCATCAGCCAGTTGTTAATGCTGTCATTG
ATGGGGACGACATCATATATAGAGACTACATTGATATCAGCTTTGCTGTT
GGCACTAAAAAGGGTCTTGTTGTTCCGGTCATCCGCAACAGTGAGAGAAT
GAACTTTGCTGAGATAGAGAAGGAGATCAGCACTCTTGCTAAAAAGGCAA
ATGATGGTTCTATTTCAATTGATGAAATGGCTGGAGGCACATTCACAATA
TCTAATGGTGGTGTCTATGGAAGCCTTTTGAGTACACCAATTATTAATCC
TCCACAGTCTGCAATATTGGGCATGCACTCAATCGTGAACCGTCCAATGG
TTGTTGGAGGCAACGTCGTCCCAAGGCCAATGATGTATATTGCACTTACA
TATGATCATCGGCTGATCGATGGAAGAGAGGCTGTATTTTTCTTGCGCCG
GATCAAAGATATTGTGGAGGACCCTCGCAGGCTGCTCCTTGACATATGAA
GCCTTTGTCAATTCCTCGATTTACCTGGCACACTCAGATTGTGTAATTCG
TTTCTTAAGTACGTTTTTGGCCGGAATAAATCTAAAATTTTGTAGAGATA
TCTAAATTTTCCGGAGCTACCGGAGAAGAATACTGATCTTCATAAAATGC
TCTGGGTGTTTTGTGTTTTTGTAAAATCAGAGTGCAAATGCGTCATGCTT
CATTCCTTTATTGTATGGATACGCCTTCAGTAGCAGCCAACGCTATAAAA
GTCGCACGTTCTGCTCAAAAAAAA
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