CX298072

Overview
NameCX298072
Unique NameCX298072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: OPD21_ARATH (Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=LTA3 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.797e-19
Identity = 56/140 (40.00%), Postives = 84/140 (60.00%), Query Frame = 2
Query:   89 SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAIL--GMHSIVNRPMVVGGNVVPRP----MMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            S AV T+KGL+ P+I+N+++ + + I  E+  LA+KA  G ++  E  GGTF+ISN G+Y       IINPPQ+ IL  G  + V  P V+G + + +P     M + L+ DHR+ DG+    F+  ++   ED RRLLL
Sbjct:  499 SIAVATEKGLMTPIIKNADQKSISAISLEVKELAQKARSGKLAPHEFQGGTFSISNLGMYPVDNFCAIINPPQAGILAVGRGNKVVEP-VIGLDGIEKPSVVTKMNVTLSADHRIFDGQVGASFMSELRSNFEDVRRLLL 637          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_DICDI (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=pdhC PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19
Identity = 58/168 (34.52%), Postives = 86/168 (51.19%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRP-----MMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            A+ +AL+  PVVN+               + AV T +GL  P++R  +      I   +  LA+KA +G +   E   GTFTISN G+ G      +INPPQ+AIL + +   R  VV  N    P     ++ + L+ DHR+IDG     +L+  KD VE+P +L+L
Sbjct:  470 ASAAALRDNPVVNSTWTDQFIRRYHNIDINVAVNTPQGLFTPIVRGVDMKGLNSISTSVKQLAEKAQNGKLHPSEFESGTFTISNLGMLGIKQFAAVINPPQAAILAVGTTETR--VVLSNKPDSPYETATILSVTLSCDHRVIDGAVGAEWLKSFKDYVENPIKLIL 635          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: OPD23_ARATH (Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At1g54220 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.888e-19
Identity = 58/168 (34.52%), Postives = 92/168 (54.76%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISN-GGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPR----PMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            AA  AL+  P  N+               + AV T+ GL VPV+++++R   + I +E+  LA+KA + S+  ++  GGTFT+SN GG +G      ++NPPQ+AIL + S   R  VV GN   +      M + L+ DHR++DG     +L+  K  +E+P+ +LL
Sbjct:  374 AAALALRKVPQCNSSWTDDYIRQFKNVNINVAVQTENGLYVPVVKDADRKGLSTIGEEVRLLAQKAKENSLKPEDYEGGTFTVSNLGGPFGIKQFCAVVNPPQAAILAVGSAEKR--VVPGNGPDQFNFASYMPVTLSCDHRVVDGAIGAEWLKAFKGYIENPKSMLL 539          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_SCHPO (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Schizosaccharomyces pombe GN=SPCC794.07 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.888e-19
Identity = 60/173 (34.68%), Postives = 85/173 (49.13%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVP----------RPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            A  +AL+  P VNA               S AV T  GL+ PVIRN+  +  AEI        ++A +  +  +E  GGTFTISN G++     T IINPPQ+ IL + + V+        VVP           P+M   L+ DHR++DG  A  F   +K I+E+P  ++L
Sbjct:  318 ATTAALRQVPEVNAAWMGDFIRQYKNVDISMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNKLKPEEYQGGTFTISNLGMFPVDQFTAIINPPQACILAVGTTVD-------TVVPDSTSEKGFKVAPIMKCTLSSDHRVVDGAMAARFTTALKKILENPLEIML 483          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_CAEEL (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Caenorhabditis elegans GN=F23B12.5 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.877e-18
Identity = 57/165 (34.55%), Postives = 82/165 (49.70%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLS-TPIINPPQSAILGMHSIVNRPMVVGGNVVPR-PMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            A+  A Q  P  N+               S AV T  GL+ P+I N+     A I  EI  LA++A +G +   E  GGTFT+SN G++GS+   T IINPPQS IL +    ++ +        +   M + L+ DHR +DG     +LR  K+ +E P  +LL
Sbjct:  343 ASALACQRVPEANSYWMDSFIRENHHVDVSVAVSTPAGLITPIIFNAHAKGLATIASEIVELAQRAREGKLQPHEFQGGTFTVSNLGMFGSVSDFTAIINPPQSCILAIGGASDKLVPDEAEGYKKIKTMKVTLSCDHRTVDGAVGAVWLRHFKEFLEKPHTMLL 507          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_BUCAI (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=aceF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18
Identity = 50/134 (37.31%), Postives = 80/134 (59.70%), Query Frame = 2
Query:   92 FAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISN-GGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            FA+     L VPV+++  + N  ++  E+  L++KA    ++I++M GG FTISN GG+ GS  S PIIN P+ AILG+     +P   G   +P  M+ ++L+YDHR+I+G  A  F+  I  ++ D   L++
Sbjct:  264 FAIDVNNDLFVPVLKDVNKKNIKQLSSELILLSEKARTRKLNIEDMTGGCFTISNLGGIGGSWFS-PIINSPEVAILGISKSQIKPSWNGKEFIPSLMLPLSLSYDHRVINGAYAARFITFISRVLSDMHFLIM 396          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_ZYMMO (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Zymomonas mobilis GN=pdhC PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.093e-17
Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLL 487
            A   AL+  P VN                S AV  + GL+ P+++ ++  + + +  E+  L  +A +G +   E  GGT +ISN G++G      +INPPQ++IL + S   RP V+   +    +  I  ++DHR+IDG +A  F+   K +VE P  +L
Sbjct:  277 AQALALKATPNVNVAFDGDQMLQFSQADISVAVSVEGGLITPILKQADTKSLSALSVEMKELIARAREGRLQPQEYQGGTSSISNMGMFGIKQFNAVINPPQASILAIGSGERRPWVIDDAITIATVATITGSFDHRVIDGADAAAFMSAFKHLVEKPLGIL 438          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: OPD22_ARATH (Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.428e-17
Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISN-GGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGG----NVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            AA  AL+  P  N+               + AV T+ GL VPV++++++   + I +E+  LA+KA + S+  ++  GGTFT+SN GG +G      +INPPQ+AIL + S   R +   G    NV     M + L+ DHR+IDG     +L+  K  +E P  +LL
Sbjct:  374 AAALALRKVPQCNSSWTDEYIRQFKNVNINVAVQTENGLYVPVVKDADKKGLSTIGEEVRFLAQKAKENSLKPEDYEGGTFTVSNLGGPFGIKQFCAVINPPQAAILAIGSAEKRVVPGTGPDQYNVA--SYMSVTLSCDHRVIDGAIGAEWLKAFKGYIETPESMLL 539          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODPX_BOVIN (Pyruvate dehydrogenase protein X component OS=Bos taurus GN=PDHX PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 55/168 (32.74%), Postives = 84/168 (50.00%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV-------GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRL 484
            AA   L+  P VNA               S AV T +GL+ PVI+++      EI   +  L+KKA DG +  +E  GG+F+ISN G++G    T +INPPQ+ IL +     RP++           +  R ++ + ++ D R++D   A  FL   K  +E+P RL
Sbjct:  335 AAAVTLKQMPNVNASWDGEGAKQLPSIDISVAVATDRGLITPVIKDAAAKGLQEIADSVKALSKKARDGKLLPEEYQGGSFSISNLGMFGIDEFTAVINPPQACILAVGRF--RPVLKLTQDEEGNAQLQQRQLITVTMSSDSRVVDDELATRFLESFKANLENPLRL 500          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODO2_PSEPU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (Fragment) OS=Pseudomonas putida GN=sucB PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 2
Query:  323 MHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            MH+I+ RPM + G VV RPMMY+AL+YDHRLIDG+EAV FL  IK+++EDP RLLLDI
Sbjct:    1 MHNIIQRPMAINGQVVIRPMMYLALSYDHRLIDGKEAVTFLVTIKNLLEDPSRLLLDI 58          
The following BLAST results are available for this feature:
BLAST of CX298072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
OPD21_ARATH5.797e-1940.00Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_DICDI7.571e-1934.52Dihydrolipoyllysine-residue acetyltransferase comp... [more]
OPD23_ARATH9.888e-1934.52Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_SCHPO9.888e-1934.68Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_CAEEL2.877e-1834.55Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_BUCAI4.908e-1837.31Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_ZYMMO1.093e-1730.86Dihydrolipoyllysine-residue acetyltransferase comp... [more]
OPD22_ARATH1.428e-1734.52Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODPX_BOVIN1.209e-1632.74Pyruvate dehydrogenase protein X component OS=Bos ... [more]
ODO2_PSEPU1.209e-1668.97Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionC06008C09SK RindPdig24 Citrus clementina cDNA clone C06008C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298072 ID=CX298072; Name=CX298072; organism=Citrus clementina; type=EST; length=774bp
AGCTGCTGTTAGTGCACTCCAGCATCAGCCAGTTGTTAATGCTGTCATTG
ATGGGGACGACATCATATATAGAGACTACATTGATATCAGCTTTGCTGTT
GGCACTAAAAAGGGTCTTGTTGTTCCGGTCATCCGCAACAGTGAGAGAAT
GAACTTTGCTGAGATAGAGAAGGAGATCAGCACTCTTGCTAAAAAGGCAA
ATGATGGTTCTATTTCAATTGATGAAATGGCTGGAGGCACATTCACAATA
TCTAATGGTGGTGTCTATGGAAGCCTTTTGAGTACACCAATTATTAATCC
TCCACAGTCTGCAATATTGGGCATGCACTCAATCGTGAACCGTCCAATGG
TTGTTGGAGGCAACGTCGTCCCAAGGCCAATGATGTATATTGCACTTACA
TATGATCATCGGCTGATCGATGGAAGAGAGGCTGTATTTTTCTTGCGCCG
GATCAAAGATATTGTGGAGGACCCTCGCAGGCTGCTCCTTGACATATGAA
GCCTTTGTCAATTCCTCGATTTACCTGGCACACTCAGATTGTGTAATTCG
TTTCTTAAGTACGTTTTTGGCCGGAATAAATCTAAAATTTTGTAGAGATA
TCTAAATTTTCCGGAGCTACCGGAGAAGAATACTGATCTTCATAAAATGC
TCTGGGTGTTTTGTGTTTTTGTAAAATCAGAGTGCAAATGCGTCATGCTT
CATTCCTTTATTGTATGGATACGCCTTCAGTAGCAGCCAACGCTATAAAA
GTCGCACGTTCTGCTCAAAAAAAA
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