CX298072

Overview
NameCX298072
Unique NameCX298072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODPX_HUMAN (Pyruvate dehydrogenase protein X component, mitochondrial OS=Homo sapiens GN=PDHX PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.693e-16
Identity = 54/168 (32.14%), Postives = 84/168 (50.00%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV-------GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRL 484
            AA   L+  P VN                S AV T KGL+ P+I+++      EI   +  L+KKA DG +  +E  GG+F+ISN G++G    T +INPPQ+ IL +     RP++           +  R ++ + ++ D R++D   A  FL+  K  +E+P RL
Sbjct:  335 AAAVTLKQMPDVNVSWDGEGPKQLPFIDISVAVATDKGLLTPIIKDAAAKGIQEIADSVKALSKKARDGKLLPEEYQGGSFSISNLGMFGIDEFTAVINPPQACILAVGRF--RPVLKLTEDEEGNAKLQQRQLITVTMSSDSRVVDDELATRFLKSFKANLENPIRL 500          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_YEAST (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Saccharomyces cerevisiae GN=PDA2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.023e-15
Identity = 49/139 (35.25%), Postives = 76/139 (54.68%), Query Frame = 2
Query:   89 SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSL-LSTPIINPPQSAILGMHSI----VNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            S AV T  GL+ P+++N E    ++I  EI  L K+A    ++ +E  GGT  ISN G+  ++ + T IINPPQS IL + ++    V       G       + I  T+DHR IDG +   F++ +K ++E+P  +LL
Sbjct:  345 SVAVATPTGLLTPIVKNCEAKGLSQISNEIKELVKRARINKLAPEEFQGGTICISNMGMNNAVNMFTSIINPPQSTILAIATVERVAVEDAAAENGFSFDN-QVTITGTFDHRTIDGAKGAEFMKELKTVIENPLEMLL 482          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODPX_MOUSE (Pyruvate dehydrogenase protein X component, mitochondrial OS=Mus musculus GN=Pdhx PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.336e-15
Identity = 54/168 (32.14%), Postives = 83/168 (49.40%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMV-----VGGN--VVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRL 484
            AA   L+  P VN                S AV T KGL+ P+I+++      EI   +  L+KKA DG +  +E  GG+F+ISN G++G      +INPPQ+ IL +     RP++       GN  +    ++ + ++ D R++D   A  FL   K  +E+P RL
Sbjct:  335 AAAVTLKQMPGVNVTWDGEGPKQLPSVDISVAVATDKGLITPIIKDAAAKGIQEIADSVKVLSKKARDGKLMPEEYQGGSFSISNLGMFGIDEFAAVINPPQACILAVGRF--RPVLKLTEDEEGNPQLQQHQLITVTMSSDSRVVDDELATRFLETFKANLENPMRL 500          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_NEUCR (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Neurospora crassa GN=mrp-3 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.336e-15
Identity = 52/167 (31.14%), Postives = 83/167 (49.70%), Query Frame = 2
Query:   14 ALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLS-TPIINPPQSAILGMHS-------IVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            A +  P VN+               S AV T  GL+ P+++  E      I   +  LAKKA DG +  +E  GG+ +ISN G+  ++ S T IINPPQ+AIL + +       + N     G  V     + +  ++DH+++DG     ++R +K ++E+P  LLL
Sbjct:  294 ASKRVPTVNSSWRDGVIRQFETVDVSVAVATPNGLITPIVKGVEGKGLESISAAVKELAKKARDGKLKPEEYQGGSISISNMGMNPAVQSFTAIINPPQAAILAVGAPQKVAVPVENEDGTTG--VSWDEQIIVTASFDHKVVDGAVGAEWIRELKKVIENPLELLL 458          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODB2_BOVIN (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Bos taurus GN=DBT PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 2
Query:   95 AVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMV-VGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A+ T++GL+VP ++N +  +  EI  E++ L K  + G +S +++ GGTFT+SN G  G   + P+I PP+ AI  + +I   P     G V    +M ++ + DHR+IDG     F    K  +E+P  +LLD+
Sbjct:  347 AMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDL 481          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODB2_HUMAN (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DBT PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 2
Query:   95 AVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMV-VGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A+ T++GL+VP ++N +  +  +I  E++ L K  + G +S  ++ GGTFT+SN G  G   + P+I PP+ AI  + SI   P     G V    +M ++ + DHR+IDG     F    K  +E+P  +LLD+
Sbjct:  347 AMDTEQGLIVPNVKNVQICSIFDIATELNRLQKLGSVGQLSTTDLTGGTFTLSNIGSIGGTFAKPVIMPPEVAIGALGSIKAIPRFNQKGEVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLENPAFMLLDL 481          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_BUCBP (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=aceF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.078e-15
Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 2
Query:   98 VGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAG-GTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            V T  GL+VPVI    + N + I  ++  ++++A    ++  ++   G+FTISN G  G    TPII  P+ AILG+   + +P       +P+ M+ ++L+YDHR IDG  AV F+  +K ++ D R L++
Sbjct:  279 VDTDDGLLVPVINRVNKKNISSISNDLRIISERARSRKLNFSDIKEYGSFTISNLGGIGGTNFTPIIKYPELAILGISRALIKPYWNSHAFIPKLMLPLSLSYDHRAIDGVAAVRFITFVKKMLTDIRFLMI 410          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_RAT (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Rattus norvegicus GN=Dlat PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 2
Query:   89 SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNR--PMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            S AV T  GL+ P++ N+       I  ++ +LA KA +G +   E  GGTFTISN G++G    + IINPPQ+ IL + +  ++  P           +M + L+ DHR++DG     +L   K  +E P  +LL
Sbjct:  497 SVAVSTPAGLITPIVFNAHIKGLETIASDVVSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLIPADNEKGFDVASVMSVTLSCDHRVVDGAVGAQWLAEFKKYLEKPVTMLL 632          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_MOUSE (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dlat PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 2
Query:   89 SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNR--PMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            S AV T  GL+ P++ N+       I  ++ +LA KA +G +   E  GGTFTISN G++G    + IINPPQ+ IL + +  ++  P           +M + L+ DHR++DG     +L   K  +E P  +LL
Sbjct:  507 SVAVSTPAGLITPIVFNAHIKGLETIASDVVSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLIPADNEKGFDVASVMSVTLSCDHRVVDGAVGAQWLAEFKKYLEKPITMLL 642          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_HUMAN (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLAT PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 49/138 (35.51%), Postives = 73/138 (52.90%), Query Frame = 2
Query:   89 SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGM----HSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            S AV T  GL+ P++ N+       I  ++ +LA KA +G +   E  GGTFTISN G++G    + IINPPQ+ IL +      +V      G +V    MM + L+ DHR++DG     +L   +  +E P  +LL
Sbjct:  512 SVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVA--SMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 647          
The following BLAST results are available for this feature:
BLAST of CX298072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
ODPX_HUMAN2.693e-1632.14Pyruvate dehydrogenase protein X component, mitoch... [more]
ODP2_YEAST1.023e-1535.25Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODPX_MOUSE1.336e-1532.14Pyruvate dehydrogenase protein X component, mitoch... [more]
ODP2_NEUCR1.336e-1531.14Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODB2_BOVIN1.745e-1534.81Lipoamide acyltransferase component of branched-ch... [more]
ODB2_HUMAN3.888e-1534.81Lipoamide acyltransferase component of branched-ch... [more]
ODP2_BUCBP5.078e-1534.85Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RAT1.131e-1434.56Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_MOUSE1.131e-1434.56Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_HUMAN1.131e-1435.51Dihydrolipoyllysine-residue acetyltransferase comp... [more]

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Properties
Property NameValue
Genbank descriptionC06008C09SK RindPdig24 Citrus clementina cDNA clone C06008C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298072 ID=CX298072; Name=CX298072; organism=Citrus clementina; type=EST; length=774bp
AGCTGCTGTTAGTGCACTCCAGCATCAGCCAGTTGTTAATGCTGTCATTG
ATGGGGACGACATCATATATAGAGACTACATTGATATCAGCTTTGCTGTT
GGCACTAAAAAGGGTCTTGTTGTTCCGGTCATCCGCAACAGTGAGAGAAT
GAACTTTGCTGAGATAGAGAAGGAGATCAGCACTCTTGCTAAAAAGGCAA
ATGATGGTTCTATTTCAATTGATGAAATGGCTGGAGGCACATTCACAATA
TCTAATGGTGGTGTCTATGGAAGCCTTTTGAGTACACCAATTATTAATCC
TCCACAGTCTGCAATATTGGGCATGCACTCAATCGTGAACCGTCCAATGG
TTGTTGGAGGCAACGTCGTCCCAAGGCCAATGATGTATATTGCACTTACA
TATGATCATCGGCTGATCGATGGAAGAGAGGCTGTATTTTTCTTGCGCCG
GATCAAAGATATTGTGGAGGACCCTCGCAGGCTGCTCCTTGACATATGAA
GCCTTTGTCAATTCCTCGATTTACCTGGCACACTCAGATTGTGTAATTCG
TTTCTTAAGTACGTTTTTGGCCGGAATAAATCTAAAATTTTGTAGAGATA
TCTAAATTTTCCGGAGCTACCGGAGAAGAATACTGATCTTCATAAAATGC
TCTGGGTGTTTTGTGTTTTTGTAAAATCAGAGTGCAAATGCGTCATGCTT
CATTCCTTTATTGTATGGATACGCCTTCAGTAGCAGCCAACGCTATAAAA
GTCGCACGTTCTGCTCAAAAAAAA
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