CX298072

Overview
NameCX298072
Unique NameCX298072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODB2_MOUSE (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dbt PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.251e-13
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 2
Query:   95 AVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMV-VGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 496
            A+ T+ GL+VP ++N +  +   I  E++ L K  + G +   ++ GGTFT+SN G  G   + P+I PP+ AI  + +I   P     G+V    +M ++ + DHR+IDG     F    K  +E+P  +LLD+
Sbjct:  347 AMDTELGLIVPNVKNVQVRSVFGIGMELNRLQKLGSSGQLGTTDLTGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGAIKALPRFDQKGDVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLENPAFMLLDL 481          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_RHIME (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rhizobium meliloti GN=pdhC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.787e-13
Identity = 40/132 (30.30%), Postives = 69/132 (52.27%), Query Frame = 2
Query:   95 AVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLL 490
            AV    GL+ P++R +E  + + I  E+  L K+A +  +  +E  GGT  +SN G+ G      ++NPP + IL + +  +R +V    +V   +M + L+ DHR +DG      L   K  +E+P  +L+
Sbjct:  316 AVSIPGGLITPIVRQAELKSLSAISNEMKDLGKRAKERKLKPEEYQGGTTAVSNMGMMGVKDFAAVVNPPHATILAVGAGEDRVVVRNKEMVIANVMTVTLSTDHRCVDGALGAELLAAFKRYIENPMGMLV 447          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_MYCGE (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Mycoplasma genitalium GN=pdhC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 45/159 (28.30%), Postives = 79/159 (49.69%), Query Frame = 2
Query:    2 AAVSALQHQPVVNAVXXXXXXXXXXXXXXS--FAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVED 472
            A V+AL+  PV NA               +   AV T++GL+VP I+ ++  +  EI + I  LA KA    I + ++  GT +++N G  G+ + TPII  P+  I+   ++  R + V   +    ++ + +  DHR +DG +   F + I   +E+
Sbjct:  219 AIVNALKKFPVFNASYDPDQNEIVLNDDINVGIAVDTEEGLIVPNIKQAQTKSVVEIAQAIVDLANKARTKKIKLTDLNKGTISVTNFGSLGAAVGTPIIKYPEMCIVATGNLEERIVKVENGIAVHTILPLTIAADHRWVDGADVGRFGKEIAKQIEE 377          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: ODP2_MYCPN (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Mycoplasma pneumoniae GN=pdhC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 37/126 (29.37%), Postives = 67/126 (53.17%), Query Frame = 2
Query:   95 AVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVED 472
            AV T  GL+VP I+ ++  +  +I K+I  LA +A    I + +++ GT +++N G  G+   TPII  P+  I+   ++  R +   G V    ++ + +  DHR +DG +   F + I   +E+
Sbjct:  270 AVDTPDGLIVPNIKQAQTKSVVDIAKDIVDLANRARSKQIKLPDLSKGTISVTNFGSLGAAFGTPIIKHPEMCIVATGNMEERVVRAEGGVAVHTILPLTIAADHRWVDGADVGRFGKEIAKQIEE 395          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: Y1564_DICDI (Pyruvate dehydrogenase complex subunit homolog DDB_G0271564, mitochondrial OS=Dictyostelium discoideum GN=pdhX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 2
Query:   89 SFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGM 325
            SFAV T +GL+ P+I N+++     I  E   LA KA DG +  +E  GGTF++SN G++G      IIN PQ+ IL +
Sbjct:  219 SFAVSTDRGLITPIITNTDKKQLLAISNESKQLALKARDGKLKPEEFIGGTFSVSNLGMFGITSFNAIINYPQAGILAI 297          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: KGD_MYCTU (2-oxoglutarate decarboxylase OS=Mycobacterium tuberculosis GN=kgd PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:  107 KKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPR-------PMMYIALTYDHRLIDGREAVFFLRRIKDIV 466
            K+ LVV  I+  E M FA+       + ++A DG ++ ++ AG T +++N G  G++ S P + P Q AI+G+   +  P    G    R        ++ +  TYDHR+I G E+  FLR I +++
Sbjct:  210 KRSLVVAGIKRCETMRFAQFVTAYEDIVRRARDGKLTTEDFAGVTISLTNPGTIGTVHSVPRLMPGQGAIIGV-GAMEYPAEFQGASEERIAELGIGKLITLTSTYDHRIIQGAESGDFLRTIHELL 335          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: KGD_MYCTA (2-oxoglutarate decarboxylase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=kgd PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:  107 KKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPR-------PMMYIALTYDHRLIDGREAVFFLRRIKDIV 466
            K+ LVV  I+  E M FA+       + ++A DG ++ ++ AG T +++N G  G++ S P + P Q AI+G+   +  P    G    R        ++ +  TYDHR+I G E+  FLR I +++
Sbjct:  210 KRSLVVAGIKRCETMRFAQFVTAYEDIVRRARDGKLTTEDFAGVTISLTNPGTIGTVHSVPRLMPGQGAIIGV-GAMEYPAEFQGASEERIAELGIGKLITLTSTYDHRIIQGAESGDFLRTIHELL 335          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: KGD_MYCBP (2-oxoglutarate decarboxylase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=kgd PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:  107 KKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPR-------PMMYIALTYDHRLIDGREAVFFLRRIKDIV 466
            K+ LVV  I+  E M FA+       + ++A DG ++ ++ AG T +++N G  G++ S P + P Q AI+G+   +  P    G    R        ++ +  TYDHR+I G E+  FLR I +++
Sbjct:  210 KRSLVVAGIKRCETMRFAQFVTAYEDIVRRARDGKLTTEDFAGVTISLTNPGTIGTVHSVPRLMPGQGAIIGV-GAMEYPAEFQGASEERIAELGIGKLITLTSTYDHRIIQGAESGDFLRTIHELL 335          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: KGD_MYCBO (2-oxoglutarate decarboxylase OS=Mycobacterium bovis GN=kgd PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:  107 KKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPR-------PMMYIALTYDHRLIDGREAVFFLRRIKDIV 466
            K+ LVV  I+  E M FA+       + ++A DG ++ ++ AG T +++N G  G++ S P + P Q AI+G+   +  P    G    R        ++ +  TYDHR+I G E+  FLR I +++
Sbjct:  210 KRSLVVAGIKRCETMRFAQFVTAYEDIVRRARDGKLTTEDFAGVTISLTNPGTIGTVHSVPRLMPGQGAIIGV-GAMEYPAEFQGASEERIAELGIGKLITLTSTYDHRIIQGAESGDFLRTIHELL 335          
BLAST of CX298072 vs. ExPASy Swiss-Prot
Match: KGD_MYCVP (2-oxoglutarate decarboxylase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=kgd PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 41/129 (31.78%), Postives = 66/129 (51.16%), Query Frame = 2
Query:  107 KKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPR-------PMMYIALTYDHRLIDGREAVFFLRRIKDIVED 472
            K+ LVV  I+N E M+F +       + ++A DG ++ ++ AG T +++N G  G++ S P +   Q AI+G    +  P    G    R        +M +  TYDHR+I G E+  FLR I  ++ D
Sbjct:  226 KRSLVVAAIKNCETMHFGQFIAAYEDIVRRARDGKLTAEDFAGVTISLTNPGTIGTVHSVPRLMKGQGAIVGA-GAMEYPAEFQGASEERIAELGVGKLMTLTSTYDHRIIQGAESGDFLRTIHTLLLD 353          
The following BLAST results are available for this feature:
BLAST of CX298072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
ODB2_MOUSE1.251e-1333.33Lipoamide acyltransferase component of branched-ch... [more]
ODP2_RHIME2.787e-1330.30Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_MYCGE2.359e-1228.30Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_MYCPN4.024e-1229.37Dihydrolipoyllysine-residue acetyltransferase comp... [more]
Y1564_DICDI1.529e-1143.04Pyruvate dehydrogenase complex subunit homolog DDB... [more]
KGD_MYCTU5.811e-1131.502-oxoglutarate decarboxylase OS=Mycobacterium tube... [more]
KGD_MYCTA5.811e-1131.502-oxoglutarate decarboxylase OS=Mycobacterium tube... [more]
KGD_MYCBP5.811e-1131.502-oxoglutarate decarboxylase OS=Mycobacterium bovi... [more]
KGD_MYCBO5.811e-1131.502-oxoglutarate decarboxylase OS=Mycobacterium bovi... [more]
KGD_MYCVP9.911e-1131.782-oxoglutarate decarboxylase OS=Mycobacterium vanb... [more]

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Properties
Property NameValue
Genbank descriptionC06008C09SK RindPdig24 Citrus clementina cDNA clone C06008C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298072 ID=CX298072; Name=CX298072; organism=Citrus clementina; type=EST; length=774bp
AGCTGCTGTTAGTGCACTCCAGCATCAGCCAGTTGTTAATGCTGTCATTG
ATGGGGACGACATCATATATAGAGACTACATTGATATCAGCTTTGCTGTT
GGCACTAAAAAGGGTCTTGTTGTTCCGGTCATCCGCAACAGTGAGAGAAT
GAACTTTGCTGAGATAGAGAAGGAGATCAGCACTCTTGCTAAAAAGGCAA
ATGATGGTTCTATTTCAATTGATGAAATGGCTGGAGGCACATTCACAATA
TCTAATGGTGGTGTCTATGGAAGCCTTTTGAGTACACCAATTATTAATCC
TCCACAGTCTGCAATATTGGGCATGCACTCAATCGTGAACCGTCCAATGG
TTGTTGGAGGCAACGTCGTCCCAAGGCCAATGATGTATATTGCACTTACA
TATGATCATCGGCTGATCGATGGAAGAGAGGCTGTATTTTTCTTGCGCCG
GATCAAAGATATTGTGGAGGACCCTCGCAGGCTGCTCCTTGACATATGAA
GCCTTTGTCAATTCCTCGATTTACCTGGCACACTCAGATTGTGTAATTCG
TTTCTTAAGTACGTTTTTGGCCGGAATAAATCTAAAATTTTGTAGAGATA
TCTAAATTTTCCGGAGCTACCGGAGAAGAATACTGATCTTCATAAAATGC
TCTGGGTGTTTTGTGTTTTTGTAAAATCAGAGTGCAAATGCGTCATGCTT
CATTCCTTTATTGTATGGATACGCCTTCAGTAGCAGCCAACGCTATAAAA
GTCGCACGTTCTGCTCAAAAAAAA
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