CX298077

Overview
NameCX298077
Unique NameCX298077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:   87 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 323
            VV+D    WCGPC+ +AP   +LA++  +V+FLK+D + E K++A +  +  +PTF  LKE  +V +V G+K ++L + I
Sbjct:  105 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 184          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 32/92 (34.78%), Postives = 58/92 (63.04%), Query Frame = 3
Query:   78 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 350
            +++VV+D    WCGPC+ IAP    L++K  +V+FLK+D + E + +A +  +  +PTF  LK+ ++V +V G+K ++L   I    + +S+
Sbjct:   90 EKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARSASSS 181          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 31/90 (34.44%), Postives = 57/90 (63.33%), Query Frame = 3
Query:   72 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 335
            ++ + V+VDF ASWCGPC  + P + +LA       +  K++VDE  ++A  + + ++PT + +K GK+VD++VG+  K  + + I +H+
Sbjct:   18 DSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEHI 107          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 31/92 (33.70%), Postives = 58/92 (63.04%), Query Frame = 3
Query:   72 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 347
            +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ G+   EL + + +H+++ S
Sbjct:   31 KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGS 122          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 3
Query:   87 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 335
            V+VDF A WCGPCR +AP + E++++    V  +K++ DE  + A+ + + ++PT M  K G+ VD VVG+  K  L  T+ K+L
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLASTLEKYL 107          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 29/86 (33.72%), Postives = 57/86 (66.28%), Query Frame = 3
Query:   87 VVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 338
            V+VDF A WCGPCR ++P +  +A++   ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+G+  K  L+ T+ K+++
Sbjct:   22 VLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTVIGAVPKSTLESTLNKYIS 107          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: GLRX3_HUMAN (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 30/92 (32.61%), Postives = 56/92 (60.87%), Query Frame = 3
Query:   72 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 347
            + K L+VV F A W   C  +   +AELAK+LP V F+K++ + +  V+  + + ++PTF+F K  + +D++ G+   EL + + +H ++ S
Sbjct:   29 KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS 120          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: THIO3_DICDI (Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = 3
Query:   48 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 335
            NE+L K  +  Q VVVDF+A WCGPCR IAP   +L+ +     F+ VD+D++ +      + ++PTF F   G  V +  G+ +  L+ T+  ++
Sbjct:   10 NEELDKYLQ-HQRVVVDFSAEWCGPCRAIAPVFDKLSNEFTTFTFVHVDIDKVNTHPIVKEIRSVPTFYFYVNGAKVSEFSGANEATLRSTLEANI 104          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 3
Query:   33 TVEAWNEQLQKSN-ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS 296
            TV+  N   Q    ++ + VVVDF A WCGPC+ IAP L E+A ++   V   KV++DE   +A  + V ++PT +  K+G++   +VG+
Sbjct:    2 TVKVDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELAANMVGA 91          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 30/92 (32.61%), Postives = 58/92 (63.04%), Query Frame = 3
Query:   72 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 347
            +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ G+   EL + + +H+++ +
Sbjct:   31 KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGA 122          
The following BLAST results are available for this feature:
BLAST of CX298077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
TRXF_SPIOL3.854e-1140.00Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
TRXF_BRANA3.854e-1134.78Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
THIO_CHLLT3.854e-1134.44Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
GLRX3_RAT3.854e-1133.70Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
THIO_SYNY35.033e-1140.00Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO_PORPU5.033e-1133.72Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
GLRX3_HUMAN5.033e-1132.61Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2[more]
THIO3_DICDI6.573e-1135.42Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC ... [more]
THIO1_CORNE8.585e-1137.78Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
GLRX3_MOUSE8.585e-1132.61Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06008D02SK RindPdig24 Citrus clementina cDNA clone C06008D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298077 ID=CX298077; Name=CX298077; organism=Citrus clementina; type=EST; length=617bp
GAGGCAGAAGAGGGAAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAAC
GAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTT
CACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAG
AGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGAT
GAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTT
CATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGATCAAAGA
AAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCCTCTGCC
TAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACC
TCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGAT
TGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAGC
TCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGGGGTAGATCGT
TCTTTGTTGTTGAACCTAATTTTGATATTGAGAGTGACTCATATTTAAAA
AAAAAAAAAAAAAAAAA
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