CX298077

Overview
NameCX298077
Unique NameCX298077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3
Query:   87 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 335
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3
Query:   87 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 335
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3
Query:   87 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 335
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 3
Query:   84 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKH 332
            LV++DF A WCGPC+ + P L  L  ++ +VL  KV++D+  + A  + V ++PT +  K+GK VD+VVG K K+ L + I +H
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQH 101          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3
Query:   87 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 335
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 3
Query:   87 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 323
            VV+D    WCGPC+ IAP   EL++K  +V+FLK+D + + KS+A +  ++ +PTF  LK+ KIV +V G+K ++L   I
Sbjct:   97 VVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAI 176          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 29/84 (34.52%), Postives = 54/84 (64.29%), Query Frame = 3
Query:   81 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 332
            ++ VVDF A WCGPC+++ PFL +L+++     F+ V+ D+   +A    V A+PT +  ++G+ +D++VG+  + L   +AK+
Sbjct:   36 KVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 3
Query:   84 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 335
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 3
Query:   84 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 335
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of CX298077 vs. ExPASy Swiss-Prot
Match: TXND2_RAT (Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 3
Query:   39 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 329
            E + E L+ + E  +LV VDF+A WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  V  +PTF F K  + V +  G+  E+L+++IA+
Sbjct:  454 EEFEEVLKDAGE--KLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVDTEDCEQLVQDCEVFHLPTFQFYKNEEKVGEFSGALVEKLEKSIAE 548          
The following BLAST results are available for this feature:
BLAST of CX298077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIOM_RAT5.377e-1342.86Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE5.377e-1342.86Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN5.377e-1342.86Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIO_CHLCV7.023e-1341.67Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
THIOM_BOVIN7.023e-1342.86Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
TRXF_PEA1.565e-1243.75Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
TRX2_SCHPO3.485e-1234.52Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
THIO_LISMO3.485e-1239.53Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN3.485e-1239.53Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
TXND2_RAT4.552e-1238.14Thioredoxin domain-containing protein 2 OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionC06008D02SK RindPdig24 Citrus clementina cDNA clone C06008D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298077 ID=CX298077; Name=CX298077; organism=Citrus clementina; type=EST; length=617bp
GAGGCAGAAGAGGGAAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAAC
GAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTT
CACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAG
AGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGAT
GAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTT
CATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGATCAAAGA
AAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCCTCTGCC
TAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACC
TCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGAT
TGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAGC
TCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGGGGTAGATCGT
TCTTTGTTGTTGAACCTAATTTTGATATTGAGAGTGACTCATATTTAAAA
AAAAAAAAAAAAAAAAA
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