CX298078

Overview
NameCX298078
Unique NameCX298078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length363
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.329e-12
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            LTD NPDDPLVPEIAH+YK+D+ KYEATAR WT+KYA+
Sbjct:  111 LTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYAV 148          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12
Identity = 28/38 (73.68%), Postives = 36/38 (94.74%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            LTDPNPDDPLVPEIAH+YK+D+++YE +AR WT+KYA+
Sbjct:  110 LTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12
Identity = 29/38 (76.32%), Postives = 36/38 (94.74%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            LTDPNPDDPLVPEIAH+YK+ +A+YE+TAR WT+KYA+
Sbjct:  110 LTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYAI 147          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            LTD NPDDPLVPEIA +YK+DKAKYEATA+ WT+KYA+
Sbjct:  111 LTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKYAV 148          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.778e-12
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            LTD NPDDPLVPEIAH+YK D+ KYEATA+ WT+KYA+
Sbjct:  110 LTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYAV 147          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.972e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            L DPNPDDPLVPEIAH YK+D+ KY   AR WTQKYAM
Sbjct:  110 LCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM 147          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            L DPNPDDPLVPEIA +YK+D+ KY  TAR WTQKYAM
Sbjct:  110 LCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYAM 147          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            L DPNPDDPLVPEIA +YK+D+ KY  TAR WTQKYAM
Sbjct:  110 LCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYAM 147          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.738e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            L DPNPDDPLVP+IA +YKSDK KY   AR WTQKYAM
Sbjct:  110 LCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.738e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 3
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            L DPNPDDPLVP+IA +YKSDK KY   AR WTQKYAM
Sbjct:  110 LCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          
The following BLAST results are available for this feature:
BLAST of CX298078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
UBC4_YEAST2.329e-1278.95Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC4_SCHPO3.973e-1273.68Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC1_MAGGR3.973e-1276.32Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC5_YEAST5.190e-1278.95Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC4_CANAL6.778e-1276.32Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UB2D4_HUMAN1.972e-1176.32Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
U2D2B_RAT2.576e-1176.32Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE2.576e-1176.32Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UB2D1_MOUSE5.738e-1176.32Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN5.738e-1176.32Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC06008D03SK RindPdig24 Citrus clementina cDNA clone C06008D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298078 ID=CX298078; Name=CX298078; organism=Citrus clementina; type=EST; length=363bp
GAGGGCTTACTGACCCAAATCCTGACGACCCGCTTGTACCGGAGATTGCT
CACATGTACAAGTCCGACAAGGCCAAATATGAAGCCACTGCCAGGAGCTG
GACACAGAAGTATGCCATGGGATAGTTGTTTGGATATTGCAGAAATGGAA
CTCATTTATATGAAATATGTTGTGTTTTTTTCTCCTTTTTCTTCAATCTT
GCTTCGGGAAGGGGATGTTTTGTATTTTAGTAATGAGGAAGGATGTTTGG
GGAGGAGTTGCAAGGGCAAGACGATTTTGTTAATGTTGAATGTTTATTGT
TTGAAACTCCTATCATTCAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAA
GGGGGGGCCCGGT
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