CX298078

Overview
NameCX298078
Unique NameCX298078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length363
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.738e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 3 
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            L DPNPDDPLVP+IA +YKSDK KY   AR WTQKYAM
Sbjct:  110 LCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147
[Close]
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 3 
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            L DPNPDDPLVPEIA +YK+D+ KY   AR WTQKYAM
Sbjct:  110 LCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
[Close]
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 3 
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            L DPNPDDPLVPEIA +YK+D+ KY   AR WTQKYAM
Sbjct:  110 LCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
[Close]
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 3 
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            L DPNPDDPLVPEIA +YK+D+ KY   AR WTQKYAM
Sbjct:  110 LCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
[Close]
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 3 
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            L DPNPDDPLVPEIA +YK+D+ KY   AR WTQKYAM
Sbjct:  110 LCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
[Close]
BLAST of CX298078 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 3 
Query:    6 LTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 119
            L DPNPDDPLVPEIA +YK+D+ KY   AR WTQKYAM
Sbjct:  110 LCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
The following BLAST results are available for this feature:
BLAST of CX298078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
UB2D1_BOVIN5.738e-1176.32Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UB2D2_XENLA9.787e-1173.68Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT9.787e-1173.68Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE9.787e-1173.68Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN9.787e-1173.68Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN9.787e-1173.68Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionC06008D03SK RindPdig24 Citrus clementina cDNA clone C06008D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298078 ID=CX298078; Name=CX298078; organism=Citrus clementina; type=EST; length=363bp
GAGGGCTTACTGACCCAAATCCTGACGACCCGCTTGTACCGGAGATTGCT
CACATGTACAAGTCCGACAAGGCCAAATATGAAGCCACTGCCAGGAGCTG
GACACAGAAGTATGCCATGGGATAGTTGTTTGGATATTGCAGAAATGGAA
CTCATTTATATGAAATATGTTGTGTTTTTTTCTCCTTTTTCTTCAATCTT
GCTTCGGGAAGGGGATGTTTTGTATTTTAGTAATGAGGAAGGATGTTTGG
GGAGGAGTTGCAAGGGCAAGACGATTTTGTTAATGTTGAATGTTTATTGT
TTGAAACTCCTATCATTCAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAA
GGGGGGGCCCGGT
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