CX298093

Overview
NameCX298093
Unique NameCX298093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: S15A4_MOUSE (Solute carrier family 15 member 4 OS=Mus musculus GN=Slc15a4 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.750e-12
Identity = 44/159 (27.67%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   19 TSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQ------------ISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRS-----NLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKH 444
            +SL+R+  G+ F + +   + ++E +R +   +K I             +  +W +PQY L+G  E F  +  LEF     P+ M+S   GLF     +G FV S L+++V  +    W+ S     N+N   L+ +++LLA +     ++FL V++K+
Sbjct:  401 SSLKRIAVGMFFVMCSAFAAGILESKRLDLVKEKTINQTIGGVVYHAADLPIWWQIPQYVLIGISEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGIGSFVGSGLLALV-SLKAIGWMSSHTDFGNINSCHLHYYFFLLAAIQGATLLLFLIVSVKY 558          
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: S15A4_RAT (Solute carrier family 15 member 4 OS=Rattus norvegicus GN=Slc15a4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.285e-12
Identity = 44/159 (27.67%), Postives = 79/159 (49.69%), Query Frame = 1
Query:   19 TSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHIQ------------ISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLRS-----NLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKH 444
            +SL+R+  G+ F   +   + ++E +R +   +K I             +  +W +PQY L+G  E F  +  LEF     P+ M+S   GLF     +G FV S L+++V  +    W+ S     N+N   L+ +++LLA +     ++FL V++K+
Sbjct:  399 SSLKRIAVGMFFVTCSAFAAGILESKRLDLVKEKTINQTIGGVVYHAADLPIWWQIPQYVLIGISEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGIGSFVGSGLLALV-SLKAIGWMSSHTDFGNINSCHLHYYFFLLAAIQGATLLLFLIVSVKY 556          
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: S15A3_HUMAN (Solute carrier family 15 member 3 OS=Homo sapiens GN=SLC15A3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.300e-11
Identity = 42/161 (26.09%), Postives = 83/161 (51.55%), Query Frame = 1
Query:   19 TSLQRVGTGLIFSVIAMIVSAVIEQQR------RETSVQKHIQI-------SAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLR-----SNLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKHQ 447
            ++LQ++  G+ F   ++IV+ V+E +R       ET  Q+  ++       S +W +PQY L+G  E F  +  LEF   E P  M+    G+F     +G  + S LV+++       WL       N+N  +++ +++LLA +  +  ++F+++A +++
Sbjct:  406 SALQKMALGMFFGFTSVIVAGVLEMERLHYIHHNETVSQQIGEVLYNAAPLSIWWQIPQYLLIGISEIFASIPGLEFAYSEAPRSMQGAIMGIFFCLSGVGSLLGSSLVALLS--LPGGWLHCPKDFGNINNCRMDLYFFLLAGIQAVTALLFVWIAGRYE 564          
BLAST of CX298093 vs. ExPASy Swiss-Prot
Match: S15A3_MOUSE (Solute carrier family 15 member 3 OS=Mus musculus GN=Slc15a3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.628e-11
Identity = 40/161 (24.84%), Postives = 80/161 (49.69%), Query Frame = 1
Query:   19 TSLQRVGTGLIFSVIAMIVSAVIEQQRRETSVQKHI-------------QISAFWLVPQYFLVGAGEAFVYVGQLEFFIREGPERMKSMSTGLFLSAISMGMFVSSMLVSIVDKITNKHWLR-----SNLNKGKLNNFYWLLAVLGLLNFMVFLFVAMKHQ 447
            +SLQ++  G+ F   ++IV+ V+E++R +                     +S +W +PQY L+G  E F  +  LEF   E P  M+    G+F     +G  + S LV+++       W+       N+N  +++ +++LLA +  +  ++FL++A +++
Sbjct:  403 SSLQKMALGMFFGFTSIIVAGVLEKERLQYIAANQTVPQLIGKDLYYAAPLSIWWQIPQYLLIGVSEIFASIPGLEFAYSEAPRSMQGAIMGIFFCLSGVGSLLGSGLVALLS--FPGGWMYCPKDFGNINNCQMDRYFFLLAGIEAVTAVLFLWIAGRYE 561          
The following BLAST results are available for this feature:
BLAST of CX298093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
S15A4_MOUSE1.750e-1227.67Solute carrier family 15 member 4 OS=Mus musculus ... [more]
S15A4_RAT2.285e-1227.67Solute carrier family 15 member 4 OS=Rattus norveg... [more]
S15A3_HUMAN3.300e-1126.09Solute carrier family 15 member 3 OS=Homo sapiens ... [more]
S15A3_MOUSE5.628e-1124.84Solute carrier family 15 member 3 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC06008E06SK RindPdig24 Citrus clementina cDNA clone C06008E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298093 ID=CX298093; Name=CX298093; organism=Citrus clementina; type=EST; length=650bp
CACTCCATCCAAGGAATGACAAGCCTTCAGAGGGTTGGCACTGGACTAAT
TTTTTCAGTGATTGCTATGATTGTTTCTGCCGTTATTGAGCAGCAAAGGA
GGGAAACTTCAGTTCAAAAGCACATCCAAATAAGTGCTTTCTGGCTAGTC
CCTCAGTACTTTCTTGTCGGCGCAGGCGAAGCTTTTGTTTATGTGGGACA
ACTTGAGTTCTTCATTAGGGAAGGGCCAGAGAGGATGAAATCAATGAGCA
CAGGGCTGTTTCTAAGTGCCATTTCAATGGGGATGTTTGTTAGCAGCATG
TTGGTGTCTATTGTTGACAAAATAACCAATAAGCACTGGCTGAGAAGCAA
TTTGAATAAAGGGAAGTTAAACAACTTCTATTGGCTACTTGCAGTGCTAG
GACTTTTGAATTTCATGGTGTTTCTTTTCGTTGCAATGAAGCATCAGTAT
AATGTGCAGCATCGTGTTAAGGGAGATAAAGAGCTTGAGAATTTCAATGA
TGGGAAAGTTTAAGATTTGGAGAACAATTGGATTGCTGAGGGAAAAATGG
AGCTCTAGTTGGTGTTTGCTTTTGAGCTTAATATGTAACAGTATATTGCC
AGGTTGTATTTAGTTAATTTTAAGCATTCTTTTGTGTGCCCTATTAAGCA
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