CX298097

Overview
NameCX298097
Unique NameCX298097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: STM_BRAOL (Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea GN=STM PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.193e-20
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 2
Query:   23 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            +ELK +L + +   +  +++E ++KR+ GKLP +    L +WW +H KWPYP+E  K  L E TGL  KQINNWFINQRKR+W
Sbjct:  262 RELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHW 344          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: STM_ARATH (Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana GN=STM PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.193e-20
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 2
Query:   23 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            +ELK +L + +   +  +++E ++KR+ GKLP +    L +WW +H KWPYP+E  K  L E TGL  KQINNWFINQRKR+W
Sbjct:  261 RELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHW 343          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KN1_SOLLC (Homeotic protein knotted-1 OS=Solanum lycopersicum GN=KN1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.193e-20
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 2
Query:   23 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            +ELK  L + +   +  +++E+ +K++ GKLP D    L  WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:  235 RELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLITWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 317          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNOX4_MAIZE (Homeobox protein knotted-1-like 4 (Fragment) OS=Zea mays GN=KNOX4 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 2
Query:   26 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            ELK +L + +   +  +R+E  +K++ GKLP +    L +WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:    1 ELKYQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAEATGLDQKQINNWFINQRKRHW 82          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: LET6_SOLLC (Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum GN=LET6 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 2
Query:   23 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            +ELK +L + +   +  +++E ++KR+ GKLP +    L +WW +H KWPYP+E  K  L E TGL  KQINNWFINQRKR+W
Sbjct:  236 RELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 318          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNAP1_MALDO (Homeobox protein knotted-1-like 1 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 2
Query:   23 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            +ELK  L + +   +  +++E+ +K++ GKLP +    L +WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:  279 RELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 361          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNAT1_ARATH (Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana GN=KNAT1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 2
Query:   23 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            +ELK  L + +   +  +++E+ +K++ GKLP +    L  WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:  278 RELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 360          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNX10_MAIZE (Homeobox protein knotted-1-like 10 (Fragment) OS=Zea mays GN=KNOX10 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 2
Query:   26 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            +LK  L   +   +  +  E+ RK++ GKLP D    L +WWQ H +WPYP+E +KA L E TGL+ KQINNWFINQRKR+W
Sbjct:    4 DLKNRLLNKYSGYLSSLWRELSRKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLEAKQINNWFINQRKRHW 85          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNOS4_ORYSJ (Homeobox protein knotted-1-like 4 OS=Oryza sativa subsp. japonica GN=OSH10 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   23 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            +ELK  L   +   +  +  E+ +K++ GKLP D    L +WWQ H +WPYP+E +KA L E TGL  KQINNWFINQRKR+W
Sbjct:  199 KELKSHLLNKYSGYLSSLWRELSKKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLDAKQINNWFINQRKRHW 281          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: HSBH1_SOYBN (Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 2
Query:   23 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            ++LK +L + +   +  +++E ++KR+ GKLP +    L  WW +H KWPYP+E  K  L E TGL  KQINNWFINQRKR+W
Sbjct:  260 RDLKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 342          
The following BLAST results are available for this feature:
BLAST of CX298097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
STM_BRAOL3.193e-2049.40Homeobox protein SHOOT MERISTEMLESS OS=Brassica ol... [more]
STM_ARATH3.193e-2049.40Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis... [more]
KN1_SOLLC3.193e-2049.40Homeotic protein knotted-1 OS=Solanum lycopersicum... [more]
KNOX4_MAIZE4.170e-2050.00Homeobox protein knotted-1-like 4 (Fragment) OS=Ze... [more]
LET6_SOLLC5.447e-2049.40Homeobox protein knotted-1-like LET6 OS=Solanum ly... [more]
KNAP1_MALDO5.447e-2048.19Homeobox protein knotted-1-like 1 OS=Malus domesti... [more]
KNAT1_ARATH7.114e-2048.19Homeobox protein knotted-1-like 1 OS=Arabidopsis t... [more]
KNX10_MAIZE9.291e-2051.22Homeobox protein knotted-1-like 10 (Fragment) OS=Z... [more]
KNOS4_ORYSJ9.291e-2050.60Homeobox protein knotted-1-like 4 OS=Oryza sativa ... [more]
HSBH1_SOYBN9.291e-2048.19Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC06008E10SK RindPdig24 Citrus clementina cDNA clone C06008E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298097 ID=CX298097; Name=CX298097; organism=Citrus clementina; type=EST; length=677bp
GGCTCTTACGGAAAGAGTTAGACAGGAGTTGAAGATTGAACTGAAGCAGG
GTTTTAAATCAAGAATTGAAGATGTAAGAGAGGAAATATTGAGAAAAAGA
AGGGCCGGAAAATTGCCCGGTGACACAACTTCAGTGCTCAAGAATTGGTG
GCAGCAGCACTCCAAATGGCCATACCCAACTGAAGATGACAAGGCAAAGC
TAGTGGAGGAGACAGGCTTGCAGCTAAAGCAAATCAACAACTGGTTCATC
AACCAGAGGAAGCGCAACTGGCACAGCAACTCCCAGTCTGTGACGTCTTT
AAAGTCAAAGCGCAAAAGGTAGAGAGACATCACCAAATATATCTTGACGA
TGAATTAATGATGTATGAGCAATGAAGGAGTAACTCACTTTCGTGTCAAT
ACACATATAGCTCTATCTAGCTAGCTTGCTTTTGTGGCTCTAGGGTACAT
ATCGTTCTGGTGCTAACTTTTGTGAAGACTCTGAAGAAACTTGGAAAGCC
TTGGTAGCTACTATAGAATGTAATTGGTGAGATGGGATTTACATAGCTTA
CTTATAAGTTTGTAGATTCATTACGTTTCCACGTAATTTCTAGCTTATAA
CAGGTTGAAGAAACTCGAGGTTTTAAGTTGCTTCGTTCTAATTCCATGAT
TGTAAATGTACATGATTGATCTTTGCT
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