CX298097

Overview
NameCX298097
Unique NameCX298097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNOX3_MAIZE (Homeobox protein knotted-1-like 3 (Fragment) OS=Zea mays GN=KNOX3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   23 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            +ELK +L + +   + ++R+E+ +KR+  KLP +    L +WW+ H +WPYP+E +K  L E TGL+ KQINNWFINQRKR+W
Sbjct:    3 KELKKQLLRKYSGCLGNLRKELCKKRKKDKLPKEARQKLLSWWELHYRWPYPSEMEKIALAESTGLEQKQINNWFINQRKRHW 85          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNOX8_MAIZE (Homeobox protein knotted-1-like 8 (Fragment) OS=Zea mays GN=KNOX8 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 2
Query:   26 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            ELK +L + +   +  +R+E  ++++ GKLP +    L +WW+ H KWPYP+E +K  L E TGL  KQINNWFINQRKR+W
Sbjct:    1 ELKHQLLRKYGGYLGGLRQEFSKRKKKGKLPKEARQKLLHWWELHYKWPYPSETEKMALAETTGLDPKQINNWFINQRKRHW 82          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNOS8_ORYSJ (Homeobox protein knotted-1-like 8 OS=Oryza sativa subsp. japonica GN=OSH43 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:   23 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            ++LK +L + +   + D+R+   ++ + GKLP +    L +WW+ H KWPYP+E +K  L + TGL  KQINNWFINQRKR+W
Sbjct:  206 KQLKHQLLRKYGGSLGDLRQVFSKRTKKGKLPKEARQKLLHWWELHYKWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRHW 288          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNOS7_ORYSJ (Homeobox protein knotted-1-like 7 OS=Oryza sativa subsp. japonica GN=OSH3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   29 LKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            LK  L + +   +  +R+E+ +KR+ GKLP +    L  WW+ H +WP P+E +K  L E TGL+ KQINN FINQRKR+W
Sbjct:  228 LKRHLLRKYSGYLGGLRKELSKKRKKGKLPKEARQKLLTWWELHYRWPNPSEMEKIALAESTGLEQKQINNCFINQRKRHW 308          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNOS9_ORYSJ (Homeobox protein knotted-1-like 9 OS=Oryza sativa subsp. japonica GN=Os03g0772100 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 2
Query:   23 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQH-SKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            ++LK +L   +   + D+R+   ++ + GKLP +    L +WW+ H  KWPYP+E +K  L + TGL  KQI+NWFINQRKR+W
Sbjct:  207 KQLKHQLLMKYGGSLGDLRQAFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSEVEKMTLAQTTGLDQKQISNWFINQRKRHW 290          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: KNOS5_ORYSJ (Putative homeobox protein knotted-1-like 5 OS=Oryza sativa subsp. japonica GN=Os03g0673500 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 2
Query:   92 RKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 271
            +K   G LP D    L  WW  H +WPYP+E +KA L E TGL  KQ+ NWFINQRKR+W
Sbjct:  229 KKNSTGHLPRDARHKLLQWWHLHYRWPYPSEAEKAALAESTGLDKKQVTNWFINQRKRHW 288          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: HBX9_DICDI (Homeobox protein 9 OS=Dictyostelium discoideum GN=hbx9 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 2
Query:   86 ILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 265
            I+++++ GKLPG+ TS+LK W  +H+  PYPTE++K  L   T L   QINNWF N R+R
Sbjct:  557 IVKRKKRGKLPGEATSILKKWLFEHNMHPYPTEEEKVALANSTFLSFNQINNWFTNARRR 616          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: ME3L2_HUMAN (Putative homeobox protein Meis3-like 2 OS=Homo sapiens GN=MEIS3P2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 2
Query:   68 EDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 265
            ED+ +E  R ++ G  P   T++++ W  QH   PYP+E+ K +LV++TGL + Q+NNWFIN R+R
Sbjct:  237 EDLDQEPRRNKKRGIFPKVATNIMRAWLFQHLWHPYPSEEQKKQLVQDTGLTILQVNNWFINARRR 302          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: PKNX1_MOUSE (Homeobox protein PKNOX1 OS=Mus musculus GN=Pknox1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 36/98 (36.73%), Postives = 55/98 (56.12%), Query Frame = 2
Query:   26 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 319
            +L+++L Q   +  +   E+   K + G LP   T+V+++W  QH   PYPTED+K ++  +T L L Q+NNWFIN R+R       S  S   K K+
Sbjct:  240 QLQLQLNQDLSTLHQ---EDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSETPKTKK 334          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: MEIS3_HUMAN (Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 2
Query:   68 EDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 265
            ED+ +E  R ++ G  P   T++++ W  QH   PYP+E+ K +L ++TGL + Q+NNWFIN R+R
Sbjct:  254 EDLDQERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 319          
The following BLAST results are available for this feature:
BLAST of CX298097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
KNOX3_MAIZE2.703e-1948.19Homeobox protein knotted-1-like 3 (Fragment) OS=Ze... [more]
KNOX8_MAIZE7.865e-1948.78Homeobox protein knotted-1-like 8 (Fragment) OS=Ze... [more]
KNOS8_ORYSJ6.658e-1845.78Homeobox protein knotted-1-like 8 OS=Oryza sativa ... [more]
KNOS7_ORYSJ2.797e-1646.91Homeobox protein knotted-1-like 7 OS=Oryza sativa ... [more]
KNOS9_ORYSJ6.232e-1644.05Homeobox protein knotted-1-like 9 OS=Oryza sativa ... [more]
KNOS5_ORYSJ6.890e-1555.00Putative homeobox protein knotted-1-like 5 OS=Oryz... [more]
HBX9_DICDI8.423e-1350.00Homeobox protein 9 OS=Dictyostelium discoideum GN=... [more]
ME3L2_HUMAN3.539e-1143.94Putative homeobox protein Meis3-like 2 OS=Homo sap... [more]
PKNX1_MOUSE4.622e-1136.73Homeobox protein PKNOX1 OS=Mus musculus GN=Pknox1 ... [more]
MEIS3_HUMAN4.622e-1142.42Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE... [more]

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Properties
Property NameValue
Genbank descriptionC06008E10SK RindPdig24 Citrus clementina cDNA clone C06008E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298097 ID=CX298097; Name=CX298097; organism=Citrus clementina; type=EST; length=677bp
GGCTCTTACGGAAAGAGTTAGACAGGAGTTGAAGATTGAACTGAAGCAGG
GTTTTAAATCAAGAATTGAAGATGTAAGAGAGGAAATATTGAGAAAAAGA
AGGGCCGGAAAATTGCCCGGTGACACAACTTCAGTGCTCAAGAATTGGTG
GCAGCAGCACTCCAAATGGCCATACCCAACTGAAGATGACAAGGCAAAGC
TAGTGGAGGAGACAGGCTTGCAGCTAAAGCAAATCAACAACTGGTTCATC
AACCAGAGGAAGCGCAACTGGCACAGCAACTCCCAGTCTGTGACGTCTTT
AAAGTCAAAGCGCAAAAGGTAGAGAGACATCACCAAATATATCTTGACGA
TGAATTAATGATGTATGAGCAATGAAGGAGTAACTCACTTTCGTGTCAAT
ACACATATAGCTCTATCTAGCTAGCTTGCTTTTGTGGCTCTAGGGTACAT
ATCGTTCTGGTGCTAACTTTTGTGAAGACTCTGAAGAAACTTGGAAAGCC
TTGGTAGCTACTATAGAATGTAATTGGTGAGATGGGATTTACATAGCTTA
CTTATAAGTTTGTAGATTCATTACGTTTCCACGTAATTTCTAGCTTATAA
CAGGTTGAAGAAACTCGAGGTTTTAAGTTGCTTCGTTCTAATTCCATGAT
TGTAAATGTACATGATTGATCTTTGCT
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