CX298097

Overview
NameCX298097
Unique NameCX298097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: ME3L1_HUMAN (Putative homeobox protein Meis3-like 1 OS=Homo sapiens GN=MEIS3P1 PE=5 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 2
Query:   68 EDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 265
            ED+ +E  R ++ G  P   T++++ W  QH   PYP+E+ K +L ++TGL + Q+NNWFIN R+R
Sbjct:  153 EDLDQEPRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 218          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: PKNX1_HUMAN (Homeobox protein PKNOX1 OS=Homo sapiens GN=PKNOX1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 2
Query:   26 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 319
            +L+++L Q      +D       K + G LP   T+V+++W  QH   PYPTED+K ++  +T L L Q+NNWFIN R+R       S  S   K K+
Sbjct:  240 QLQLQLNQDLSILHQDDGSS---KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSETPKTKK 334          
BLAST of CX298097 vs. ExPASy Swiss-Prot
Match: PKNX1_BOVIN (Homeobox protein PKNOX1 OS=Bos taurus GN=PKNOX1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 2
Query:   26 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 319
            +L+++L Q      +D       K + G LP   T+V+++W  QH   PYPTED+K ++  +T L L Q+NNWFIN R+R       S  S   K K+
Sbjct:  240 QLQLQLNQDLSILHQDDGSS---KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSETPKTKK 334          
The following BLAST results are available for this feature:
BLAST of CX298097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ME3L1_HUMAN4.622e-1142.42Putative homeobox protein Meis3-like 1 OS=Homo sap... [more]
PKNX1_HUMAN7.883e-1136.73Homeobox protein PKNOX1 OS=Homo sapiens GN=PKNOX1 ... [more]
PKNX1_BOVIN7.883e-1136.73Homeobox protein PKNOX1 OS=Bos taurus GN=PKNOX1 PE... [more]

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Properties
Property NameValue
Genbank descriptionC06008E10SK RindPdig24 Citrus clementina cDNA clone C06008E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298097 ID=CX298097; Name=CX298097; organism=Citrus clementina; type=EST; length=677bp
GGCTCTTACGGAAAGAGTTAGACAGGAGTTGAAGATTGAACTGAAGCAGG
GTTTTAAATCAAGAATTGAAGATGTAAGAGAGGAAATATTGAGAAAAAGA
AGGGCCGGAAAATTGCCCGGTGACACAACTTCAGTGCTCAAGAATTGGTG
GCAGCAGCACTCCAAATGGCCATACCCAACTGAAGATGACAAGGCAAAGC
TAGTGGAGGAGACAGGCTTGCAGCTAAAGCAAATCAACAACTGGTTCATC
AACCAGAGGAAGCGCAACTGGCACAGCAACTCCCAGTCTGTGACGTCTTT
AAAGTCAAAGCGCAAAAGGTAGAGAGACATCACCAAATATATCTTGACGA
TGAATTAATGATGTATGAGCAATGAAGGAGTAACTCACTTTCGTGTCAAT
ACACATATAGCTCTATCTAGCTAGCTTGCTTTTGTGGCTCTAGGGTACAT
ATCGTTCTGGTGCTAACTTTTGTGAAGACTCTGAAGAAACTTGGAAAGCC
TTGGTAGCTACTATAGAATGTAATTGGTGAGATGGGATTTACATAGCTTA
CTTATAAGTTTGTAGATTCATTACGTTTCCACGTAATTTCTAGCTTATAA
CAGGTTGAAGAAACTCGAGGTTTTAAGTTGCTTCGTTCTAATTCCATGAT
TGTAAATGTACATGATTGATCTTTGCT
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