CX298117

Overview
NameCX298117
Unique NameCX298117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLRB_ASPFL (Polygalacturonase B OS=Aspergillus flavus GN=pecB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.102e-21
Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            + K GIVIE DY+NG PTGKPT GVPI++LT+  VTG++ S AT VYILCG GSC +W W               N+P+GASC
Sbjct:  284 IKKNGIVIELDYKNGGPTGKPTTGVPITDLTVNGVTGSVASKATPVYILCGKGSCSDWTWKGVSISGGKKSDKCQNIPSGASC 366          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR1_COLLN (Endopolygalacturonase 1 OS=Colletotrichum lindemuthianum GN=PG1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.307e-20
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGA 613
            +AKYGIVIEQDYENGSPTGKPT+GVPIS LT+  ++G++ SSAT VYILC   SC NWKW+               +P+G+
Sbjct:  281 IAKYGIVIEQDYENGSPTGKPTSGVPISGLTLSKISGSVSSSATPVYILC--ASCTNWKWSGVSVTGGKKSSKCTGIPSGS 359          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR2_ASPTU (Polygalacturonase-2 OS=Aspergillus tubingensis GN=pgaII PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.319e-20
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            ++ YG+VI+QDYE+G PTGKPTNGV I+++ +E+VTGT+ S AT++Y+LCG+GSC +W W               N P+ ASC
Sbjct:  280 ISDYGVVIQQDYEDGKPTGKPTNGVTITDVKLESVTGTVDSKATDIYLLCGSGSCSDWTWDDVKVTGGKKSTACKNYPSVASC 362          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR2_ASPNG (Endopolygalacturonase-2 OS=Aspergillus niger GN=pgaB PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.368e-20
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            ++ YG+VI+QDYE+G PTGKPTNGV I ++ +E+VTG++ S ATE+Y+LCG+GSC +W W               N P+ ASC
Sbjct:  280 ISDYGVVIQQDYEDGKPTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCGSGSCSDWTWDDVKVTGGKKSTACKNFPSVASC 362          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR1_SCLSC (Endo-polygalacturonase OS=Sclerotinia sclerotiorum GN=PG1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKW 550
            +  YG+VIEQDYENGSPTGKPT+GVPI+ +T+ NV GT+ SSAT VY+LC    C  W W
Sbjct:  301 ITSYGVVIEQDYENGSPTGKPTSGVPITGVTLSNVHGTVSSSATNVYVLC--AKCSGWTW 358          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR1_ASPAC (Polygalacturonase 1 OS=Aspergillus aculeatus GN=pga1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            +AKYGIV++Q+Y + S T  PT GVPI++  ++NV G++ SS T + I CG+GSC +W W               NVP+GASC
Sbjct:  298 IAKYGIVVQQNYGDTSST--PTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSVSGGKTSSKCTNVPSGASC 378          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR3_ASPNG (Polygalacturonase-3 OS=Aspergillus niger GN=pgaC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  365 HEVA-----KYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSS-ATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            HE+A      YGIVIEQ+Y++ S T  PT GVPI++  +EN+ GT +    TEVYI CG+GSC +W W               NVP+G SC
Sbjct:  293 HEIAFSDATDYGIVIEQNYDDTSKT--PTTGVPITDFVLENIVGTCEDDDCTEVYIACGDGSCSDWTWTGVSVTGGSVSDDCLNVPSGISC 381          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR_GIBFU (Polygalacturonase OS=Gibberella fujikuroi GN=PGA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  371 VAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWA 553
            ++ YG+ ++QDY NG PTGKPTNGV IS +    VTGT+ SSA + +ILCG+GSC  + ++
Sbjct:  291 ISTYGVDVQQDYLNGGPTGKPTNGVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGFTFS 351          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR_PHACE (Polygalacturonase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 34/82 (41.46%), Postives = 45/82 (54.88%), Query Frame = 2
Query:  377 KYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLK-SSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            KY + +EQDY+ G PTG P   +PI  L +E VTGTL    +T VYI+C +G+C N+ W+               VP G SC
Sbjct:  286 KYAVNVEQDYKKGKPTGIPVGNIPIKGLHLEKVTGTLTGEESTPVYIICADGACSNFNWSGVSFEGASHASNCSYVPTGYSC 367          
BLAST of CX298117 vs. ExPASy Swiss-Prot
Match: PGLR4_ASPNG (Polygalacturonase-4 OS=Aspergillus niger GN=pgaE PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  368 EVAKYGIVIEQDYENGSPTGKPTNGVPISELTIENVTGTLKSSATEVYILCGNGSCKNWKWAXXXXXXXXXXXXXXNVPAGASC 619
            ++  YGIV+EQ+Y++ S +  PT+G+ I +  ++NV G+++SS T +YI+CG+ SC +W W               NVP   SC
Sbjct:  297 DITDYGIVVEQNYDDTSES--PTDGITIEDFVLDNVQGSVESSGTNIYIVCGSDSCTDWTWTDVDVTGGKTSSDCENVPDDISC 378          
The following BLAST results are available for this feature:
BLAST of CX298117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PGLRB_ASPFL5.102e-2154.22Polygalacturonase B OS=Aspergillus flavus GN=pecB ... [more]
PGLR1_COLLN3.307e-2056.79Endopolygalacturonase 1 OS=Colletotrichum lindemut... [more]
PGLR2_ASPTU4.319e-2049.40Polygalacturonase-2 OS=Aspergillus tubingensis GN=... [more]
PGLR2_ASPNG7.368e-2049.40Endopolygalacturonase-2 OS=Aspergillus niger GN=pg... [more]
PGLR1_SCLSC5.838e-1763.33Endo-polygalacturonase OS=Sclerotinia sclerotiorum... [more]
PGLR1_ASPAC7.136e-1544.58Polygalacturonase 1 OS=Aspergillus aculeatus GN=pg... [more]
PGLR3_ASPNG1.217e-1445.05Polygalacturonase-3 OS=Aspergillus niger GN=pgaC P... [more]
PGLR_GIBFU5.114e-1352.46Polygalacturonase OS=Gibberella fujikuroi GN=PGA P... [more]
PGLR_PHACE1.488e-1241.46Polygalacturonase OS=Phaedon cochleariae PE=2 SV=1[more]
PGLR4_ASPNG2.538e-1236.90Polygalacturonase-4 OS=Aspergillus niger GN=pgaE P... [more]

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Properties
Property NameValue
Genbank descriptionC06008G06SK RindPdig24 Citrus clementina cDNA clone C06008G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298117 ID=CX298117; Name=CX298117; organism=Citrus clementina; type=EST; length=689bp
GAGGCTAGTCTCGATTTTTTTTTTTTTTTTTTGATATTAATAAGCAAAAC
AACTATTGGGCTTTAGCCAAAGTTACAAATTAATACAACTCGCTGCTGCC
TTCATTCTACATTCCAAAAATAGTCGTAAGCAAAAGGAAGAATTTTACTA
ATTCCAGGCACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAACA
GTGGTGACATGGTACATTAAACCAAAACCAAAAAAGAAGTGGGGAAAGAA
GAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGGA
GATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATCCT
CGTGCCGAATTCGGCACGAGGTCGCCAAGTACGGTATCGTCATCGAGCAG
GATTACGAGAACGGCAGCCCTACCGGCAAGCCCACCAACGGTGTCCCCAT
CTCTGAGCTCACCATTGAGAACGTTACCGGTACCCTCAAGAGCAGCGCTA
CTGAAGTTTACATTCTCTGCGGTAACGGTAGCTGCAAGAACTGGAAATGG
GCTGGAAACTCTCTCTCTGGTGGTAAGAAGAGTGGCAAGTGCGGTAACGT
GCCTGCCGGTGCTTCTTGCTAGATTGCCAGCGATCAAATGGTGAAACACC
AACAGCATGACATCGACCAGACAGAGACTGGGTTATCTT
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