CX298118 | Citrus Genome Database

Overview


Name	CX298118
Unique Name	CX298118
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	533

Libraries


Library Name	Type
RindPdig24	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70

HSP 2 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.932e-32
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.829e-32
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70

HSP 2 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.532e-32
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.532e-32
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 6.532e-32
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.532e-32
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.532e-32
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.530e-32
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70

HSP 2 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.114e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1

Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1

Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CX298118 vs. ExPASy Swiss-Prot

BLAST of CX298118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93


Match Name	E-value	Identity	Description
UBIQ_ARATH	1.316e-32	100.00	Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=...	[more]
UBIQ_COPCO	2.932e-32	98.57	Ubiquitin OS=Coprinus congregatus PE=1 SV=1	[more]
UBIQ_CHLRE	3.829e-32	98.57	Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=...	[more]
UBIQ_YEAST	6.532e-32	97.14	Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1...	[more]
UBIQ_SCHPO	6.532e-32	97.14	Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=...	[more]
UBIQ_KLULA	6.532e-32	97.14	Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=...	[more]
UBIQ_CRYNE	6.532e-32	97.14	Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ...	[more]
UBIQ_CANAL	6.532e-32	97.14	Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1	[more]
UBL1_ORYSJ	8.530e-32	97.14	Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja...	[more]
UBIQ_NEUCR	1.114e-31	97.14	Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1	[more]

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Properties


Property Name	Value
Genbank description	C06008G07SK RindPdig24 Citrus clementina cDNA clone C06008G07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX298118 ID=CX298118; Name=CX298118; organism=Citrus clementina; type=EST; length=533bp
GAGGGGATTCCGCCGGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCT
GGAGGATGGAAGGACGCTCGCGGATTACAACATTCAGAAGGAATCAACTC
TTCATCTGGTTTTGCGTCTGAGGGGTGGCATGCAGATTTTTGTTAAGACA
TTGACCGGGAAGACGATTACCCTGGAGGTAGAGAGTTCTGATACCATTGA
CAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCTGATCAGC
AGAGGCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGGCGTACTCTGGCT
GATTACAACATTCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGTCTCCG
AGGTGGTGGTTTCTGAGGGGGATTCACTGCGCCCCGTGTCAATGTCTTTT
CTGTTCAAGATGGTCCTTATGTTGTCTTTGTCTTCTTGAAGAAGACTAGT
TATAATTGATAATATGGTCTTTTGTTTTTATATGTTGTTGTTTGTTGAAC
GAGTTATGCTTTTGAATAAAAAACTCTAGTTTA