CX298118

Overview
NameCX298118
Unique NameCX298118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.242e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.242e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.242e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.234e-31
Identity = 66/70 (94.29%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.221e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.432e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLV 70

HSP 2 Score: 87.8113 bits (216), Expect = 3.479e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.432e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.432e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.432e-31
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.744e-30
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTITL+VE SD+IDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

HSP 2 Score: 88.1965 bits (217), Expect = 2.664e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX298118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBIQ_CANFA3.242e-3195.71Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR3.242e-3195.71Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN3.242e-3195.71Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_TETPY4.234e-3194.29Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_EIMBO7.221e-3194.29Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_TRYBB9.432e-3194.29Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_STRPU9.432e-3194.29Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_ENCCU9.432e-3194.29Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DICDI9.432e-3194.29Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_PHYIN2.744e-3092.86Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06008G07SK RindPdig24 Citrus clementina cDNA clone C06008G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298118 ID=CX298118; Name=CX298118; organism=Citrus clementina; type=EST; length=533bp
GAGGGGATTCCGCCGGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCT
GGAGGATGGAAGGACGCTCGCGGATTACAACATTCAGAAGGAATCAACTC
TTCATCTGGTTTTGCGTCTGAGGGGTGGCATGCAGATTTTTGTTAAGACA
TTGACCGGGAAGACGATTACCCTGGAGGTAGAGAGTTCTGATACCATTGA
CAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCTGATCAGC
AGAGGCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGGCGTACTCTGGCT
GATTACAACATTCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGTCTCCG
AGGTGGTGGTTTCTGAGGGGGATTCACTGCGCCCCGTGTCAATGTCTTTT
CTGTTCAAGATGGTCCTTATGTTGTCTTTGTCTTCTTGAAGAAGACTAGT
TATAATTGATAATATGGTCTTTTGTTTTTATATGTTGTTGTTTGTTGAAC
GAGTTATGCTTTTGAATAAAAAACTCTAGTTTA
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