CX298118

Overview
NameCX298118
Unique NameCX298118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.584e-30
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 1
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLV 70          

HSP 2 Score: 86.6557 bits (213), Expect = 7.751e-17
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.153e-28
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 1
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLV 70          

HSP 2 Score: 83.9593 bits (206), Expect = 5.024e-16
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 1
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   34 EGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 5.921e-25
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1
Query:  163 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 59          

HSP 2 Score: 83.5741 bits (205), Expect = 6.562e-16
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 123
            EGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   23 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.921e-25
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 1
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+V
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMV 70          

HSP 2 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   34 EGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.838e-24
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+V
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMV 70          

HSP 2 Score: 80.4925 bits (197), Expect = 5.555e-15
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1
Query:    1 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 129
            EG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   34 EGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.011e-18
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 1
Query:  136 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.156e-18
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1
Query:  136 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.156e-18
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1
Query:  136 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.156e-18
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1
Query:  136 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.196e-17
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLV
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLV 70          
The following BLAST results are available for this feature:
BLAST of CX298118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBIQ_LEIMA3.584e-3092.86Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA1.153e-2890.00Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE5.921e-2594.92Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVOP5.921e-2578.57Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC3.838e-2474.29Ubiquitin-like protein OS=Autographa californica n... [more]
RUB1_DESAN7.011e-1863.24NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ9.156e-1861.76NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ9.156e-1861.76NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH9.156e-1861.76NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME1.196e-1757.14NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC06008G07SK RindPdig24 Citrus clementina cDNA clone C06008G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298118 ID=CX298118; Name=CX298118; organism=Citrus clementina; type=EST; length=533bp
GAGGGGATTCCGCCGGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCT
GGAGGATGGAAGGACGCTCGCGGATTACAACATTCAGAAGGAATCAACTC
TTCATCTGGTTTTGCGTCTGAGGGGTGGCATGCAGATTTTTGTTAAGACA
TTGACCGGGAAGACGATTACCCTGGAGGTAGAGAGTTCTGATACCATTGA
CAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCTGATCAGC
AGAGGCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGGCGTACTCTGGCT
GATTACAACATTCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGTCTCCG
AGGTGGTGGTTTCTGAGGGGGATTCACTGCGCCCCGTGTCAATGTCTTTT
CTGTTCAAGATGGTCCTTATGTTGTCTTTGTCTTCTTGAAGAAGACTAGT
TATAATTGATAATATGGTCTTTTGTTTTTATATGTTGTTGTTTGTTGAAC
GAGTTATGCTTTTGAATAAAAAACTCTAGTTTA
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