CX298118

Overview
NameCX298118
Unique NameCX298118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.616e-14
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLV
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70          
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.981e-13
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  130 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 339
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLV
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLV 70          
BLAST of CX298118 vs. ExPASy Swiss-Prot
Match: UBD_HUMAN (Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    7 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 336
            +P   Q L+   K L+  R+L+ Y I KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ Q +   GK+LEDG+ +ADY I+K + L L
Sbjct:   43 VPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL 158          
The following BLAST results are available for this feature:
BLAST of CX298118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBL1_SCHPO1.616e-1450.00Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST3.981e-1350.00NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
UBD_HUMAN2.853e-1136.21Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC06008G07SK RindPdig24 Citrus clementina cDNA clone C06008G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298118 ID=CX298118; Name=CX298118; organism=Citrus clementina; type=EST; length=533bp
GAGGGGATTCCGCCGGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCT
GGAGGATGGAAGGACGCTCGCGGATTACAACATTCAGAAGGAATCAACTC
TTCATCTGGTTTTGCGTCTGAGGGGTGGCATGCAGATTTTTGTTAAGACA
TTGACCGGGAAGACGATTACCCTGGAGGTAGAGAGTTCTGATACCATTGA
CAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCTGATCAGC
AGAGGCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGGCGTACTCTGGCT
GATTACAACATTCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGTCTCCG
AGGTGGTGGTTTCTGAGGGGGATTCACTGCGCCCCGTGTCAATGTCTTTT
CTGTTCAAGATGGTCCTTATGTTGTCTTTGTCTTCTTGAAGAAGACTAGT
TATAATTGATAATATGGTCTTTTGTTTTTATATGTTGTTGTTTGTTGAAC
GAGTTATGCTTTTGAATAAAAAACTCTAGTTTA
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