CX298120

Overview
NameCX298120
Unique NameCX298120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_CHICK (78 kDa glucose-regulated protein OS=Gallus gallus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.292e-16
Identity = 36/80 (45.00%), Postives = 62/80 (77.50%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            K++++A+N LE+YAY+++N + D EK+G KL   DK+ IE A+++ I+WL+S+Q A+ ++F+ K KELE +  PI++K+Y
Sbjct:  554 KERIDARNELESYAYSLKNQIGDKEKLGGKLSSEDKETIEKAVEEKIEWLESHQDADIEDFKSKKKELEEVVQPIVSKLY 633          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP72_USTMA (Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=UMS2 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.993e-16
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 2
Query:    2 EEHKKKVE---AKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            EE K+ +E   AKN LE+Y YN+RNT  + ++  KL+ ADK+ +E  + + I+WLDSN  A  DE +DK KE+E   NPI+ K+Y
Sbjct:  525 EEDKQALERTQAKNGLESYIYNVRNTTNEPQLKDKLEAADKEALEKIVKEGIEWLDSNTTASTDELKDKQKEIEEQVNPIMTKIY 609          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP7D_CAEEL (Heat shock 70 kDa protein D OS=Caenorhabditis elegans GN=hsp-4 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.909e-16
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            +  K+KVE++N LE YAY M+  + D EK+G KL   DK  IE A+++AI+WL SNQ A  +E +++ KELES+  PI++K+Y
Sbjct:  555 QAQKEKVESRNELEAYAYQMKTQIADKEKLGGKLTDEDKVSIESAVERAIEWLGSNQDASTEENKEQKKELESVVQPIVSKLY 637          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP75_DROME (Major heat shock 70 kDa protein Bc OS=Drosophila melanogaster GN=Hsp70Bc PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.668e-16
Identity = 37/83 (44.58%), Postives = 60/83 (72.29%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+H++++ ++NALE+Y +N++ +V+    G KLD ADK  + D  ++ I+WLDSN  AE +EF+ KM+EL   C+PI+ KM+Q
Sbjct:  528 EKHRQRITSRNALESYVFNVKQSVEQAPAG-KLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMHQ 609          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP74_DROME (Major heat shock 70 kDa protein Bbb OS=Drosophila melanogaster GN=Hsp70Bbb PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.668e-16
Identity = 37/83 (44.58%), Postives = 60/83 (72.29%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+H++++ ++NALE+Y +N++ +V+    G KLD ADK  + D  ++ I+WLDSN  AE +EF+ KM+EL   C+PI+ KM+Q
Sbjct:  528 EKHRQRITSRNALESYVFNVKQSVEQAPAG-KLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMHQ 609          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP73_DROME (Major heat shock 70 kDa protein Bb OS=Drosophila melanogaster GN=Hsp70Bb PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.668e-16
Identity = 37/83 (44.58%), Postives = 60/83 (72.29%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+H++++ ++NALE+Y +N++ +V+    G KLD ADK  + D  ++ I+WLDSN  AE +EF+ KM+EL   C+PI+ KM+Q
Sbjct:  528 EKHRQRITSRNALESYVFNVKQSVEQAPAG-KLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMHQ 609          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP72_DROME (Major heat shock 70 kDa protein Ba OS=Drosophila melanogaster GN=Hsp70Ba PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.668e-16
Identity = 37/83 (44.58%), Postives = 60/83 (72.29%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+H++++ ++NALE+Y +N++ +V+    G KLD ADK  + D  ++ I+WLDSN  AE +EF+ KM+EL   C+PI+ KM+Q
Sbjct:  528 EKHRQRITSRNALESYVFNVKQSVEQAPAG-KLDEADKNSVLDKCNETIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMHQ 609          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.137e-15
Identity = 36/80 (45.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            K++++ +N LE+YAY+++N + D EK+G KL   DK+ IE A+++ I+WL+S+Q A+ ++F+ K KELE I  PI+ K+Y
Sbjct:  557 KERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETIEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIVGKLY 636          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP73_YEAST (Heat shock protein SSA3 OS=Saccharomyces cerevisiae GN=SSA3 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.486e-15
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            E   ++V+AKN LE+YA+ ++NT+ +     K+   D K++E A  + I WLD++Q A  DE++D+ KELE I NPI+ K Y
Sbjct:  528 EREAERVQAKNQLESYAFTLKNTINEASFKEKVGEDDAKRLETASQETIDWLDASQAASTDEYKDRQKELEGIANPIMTKFY 609          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP71_YEAST (Heat shock protein SSA1 OS=Saccharomyces cerevisiae GN=SSA1 PE=1 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 1.486e-15
Identity = 36/83 (43.37%), Postives = 58/83 (69.88%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+  +++ +KN LE+ AY+++NT+ +   G KL+ ADK  +    ++ I WLDSN  A  +EF+DK+KEL+ I NPI++K+YQ
Sbjct:  527 EKESQRIASKNQLESIAYSLKNTISEA--GDKLEQADKDTVTKKAEETISWLDSNTTASKEEFDDKLKELQDIANPIMSKLYQ 607          
The following BLAST results are available for this feature:
BLAST of CX298120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
GRP78_CHICK2.292e-1645.0078 kDa glucose-regulated protein OS=Gallus gallus ... [more]
HSP72_USTMA2.993e-1647.06Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=... [more]
HSP7D_CAEEL3.909e-1648.19Heat shock 70 kDa protein D OS=Caenorhabditis eleg... [more]
HSP75_DROME6.668e-1644.58Major heat shock 70 kDa protein Bc OS=Drosophila m... [more]
HSP74_DROME6.668e-1644.58Major heat shock 70 kDa protein Bbb OS=Drosophila ... [more]
HSP73_DROME6.668e-1644.58Major heat shock 70 kDa protein Bb OS=Drosophila m... [more]
HSP72_DROME6.668e-1644.58Major heat shock 70 kDa protein Ba OS=Drosophila m... [more]
GRP78_XENLA1.137e-1545.0078 kDa glucose-regulated protein OS=Xenopus laevis... [more]
HSP73_YEAST1.486e-1542.68Heat shock protein SSA3 OS=Saccharomyces cerevisia... [more]
HSP71_YEAST1.486e-1543.37Heat shock protein SSA1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionC06008G09SK RindPdig24 Citrus clementina cDNA clone C06008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298120 ID=CX298120; Name=CX298120; organism=Citrus clementina; type=EST; length=607bp
CGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGAAAACTATG
CCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCTCCAAACTT
GATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAGGCAATTCA
ATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGAAGACAAGA
TGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGATGTATCAA
GGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATGCTCCTCCAGC
TGGTGGCAGTGCCGCCGGTCCCAAGATTGAGGAAGTTGACTAAGCTTCCA
GTTTTATTTTGTTGTGTTTGTGGGAGGTCGGTTTTTTGACGGTGGGAAAA
CTGGACGTTTGGTTTTTATCTTATGTTGTTTTAGCCTTAGGATGAATATT
AATTTTTCCTTTTCTTTTTATTTTTCAAATTTTACTTTTAATTCGGACCA
ATTTATATAATGAATATTTTTCGGTCCCTAAATATTGTCTCTTTTGCTTG
AAGCCTTATTAATTATGAACAAAAGTCATGCCACCCCATGAACGTTTGTG
GCCCAAA
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