CX298120

Overview
NameCX298120
Unique NameCX298120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP72_DROSI (Major heat shock 70 kDa protein Ba OS=Drosophila simulans GN=Hsp70Ba PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.629e-15
Identity = 36/83 (43.37%), Postives = 58/83 (69.88%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+ ++++ ++NALE+Y +N++ +V+    G KLD ADK  + D  +  I+WLDSN  AE +EF+ KM+EL   C+PI+ KM+Q
Sbjct:  528 EKQRQRITSRNALESYVFNVKQSVEQAPAG-KLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKMEELTRHCSPIMTKMHQ 609          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP70_SCHJA (Heat shock 70 kDa protein (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 35/82 (42.68%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKK-KIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKM 244
            E+ K ++ AKN+LE+Y Y+M+ +V+ +++  K+  +D+K +I    ++ I+W+D+NQLAE +EFE+K  ELE +C PII  M
Sbjct:   85 EKQKNRICAKNSLESYVYSMKQSVEGDEMKDKISESDRKNRILSKCEETIRWMDNNQLAEKEEFEEKKSELEKVCMPIITAM 166          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_ECHMU (78 kDa glucose-regulated protein OS=Echinococcus multilocularis GN=GRP78 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14
Identity = 36/81 (44.44%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            K++VE +N LE+ AY+++N VKD EK+G KL   + K IEDA D+AI+W+++N  AE  +++ +   LES+  PI++K+Y+
Sbjct:  555 KERVEVRNDLESLAYSIKNQVKDKEKMGGKLSDDEIKTIEDAADEAIKWMENNPQAETSDYKKQKANLESVVQPIVSKLYE 635          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_ECHGR (78 kDa glucose-regulated protein OS=Echinococcus granulosus GN=GRP78 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14
Identity = 36/81 (44.44%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            K++VE +N LE+ AY+++N VKD EK+G KL   + K IEDA D+AI+W+++N  AE  +++ +   LES+  PI++K+Y+
Sbjct:  555 KERVEVRNDLESLAYSIKNQVKDKEKMGGKLSDDEIKTIEDAADEAIKWMENNPQAETSDYKKQKANLESVVQPIVSKLYE 635          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP71_PICAN (Heat shock protein 70 1 OS=Pichia angusta GN=HSA1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            E+   ++ AKN LE+YAY+++ T  +++   K+D + ++ +  AI++ I WLD+NQ A  DE+EDK KELE I N  +  +Y
Sbjct:  530 EKEAARIAAKNGLESYAYSLKQTASEKQFEEKVDASKRESLNKAIEETISWLDNNQSATTDEYEDKRKELEGIANDALKDLY 611          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP71_DROSI (Major heat shock 70 kDa protein Ab OS=Drosophila simulans GN=Hsp70Ab PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 35/83 (42.17%), Postives = 57/83 (68.67%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+ ++++ ++NALE+Y +N++  V D+    KLD ADK  + D  +  I+WLDSN  AE +EF+ K++EL   C+PI+ KM+Q
Sbjct:  528 EKQRQRITSRNALESYVFNVKQAV-DQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKLEELTRHCSPIMTKMHQ 609          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP74_ANOAL (Heat shock protein 70 B2 OS=Anopheles albimanus GN=HSP70B2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 31/83 (37.35%), Postives = 58/83 (69.88%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+ ++++ A+N LE Y +N++ ++  E   SKL  AD+K ++D  ++ ++W+D N +A+ +EFE KM+EL   C+PI+ K++Q
Sbjct:  529 EKQRERISARNQLEAYCFNLKQSLDGEG-ASKLSDADRKTVQDRCEETLRWIDGNTMADKEEFEHKMQELTKACSPIMTKLHQ 610          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 30/82 (36.59%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            E  + +V AKN+LE Y ++++ ++ +E +  K+   D+ K++D   + + WL+ NQLAE +E+E + +ELE IC PI +++Y
Sbjct:  532 EAQRDRVAAKNSLEAYVFHVKGSLHEESLRDKIPEEDRCKVQDKCQEVLTWLEHNQLAEKEEYEHQKRELEQICRPIFSRLY 613          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP72_ANOAL (Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 30/83 (36.14%), Postives = 58/83 (69.88%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+ ++ + A+N LE Y +N++ ++  E   SKL  AD++ ++D  D+ ++W+D N +AE +E+E +M+EL  +C+PI+ K++Q
Sbjct:  529 EKQREAIAARNQLEAYCFNLKQSLDGEG-SSKLSDADRRTVQDRCDETLRWIDGNTMAEKEEYEHQMQELSRVCSPIMTKLHQ 610          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP71_ANOAL (Heat shock protein 70 A1 OS=Anopheles albimanus GN=HSP70A1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 30/83 (36.14%), Postives = 58/83 (69.88%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+ ++ + A+N LE Y +N++ ++  E   SKL  AD++ ++D  D+ ++W+D N +AE +E+E +M+EL  +C+PI+ K++Q
Sbjct:  529 EKQREAIAARNQLEAYCFNLKQSLDGEG-SSKLSEADRRTVQDRCDETLRWIDGNTMAEKEEYEHQMQELSRVCSPIMTKLHQ 610          
The following BLAST results are available for this feature:
BLAST of CX298120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
HSP72_DROSI9.629e-1543.37Major heat shock 70 kDa protein Ba OS=Drosophila s... [more]
HSP70_SCHJA1.258e-1442.68Heat shock 70 kDa protein (Fragment) OS=Schistosom... [more]
GRP78_ECHMU1.642e-1444.4478 kDa glucose-regulated protein OS=Echinococcus m... [more]
GRP78_ECHGR1.642e-1444.4478 kDa glucose-regulated protein OS=Echinococcus g... [more]
HSP71_PICAN2.145e-1440.24Heat shock protein 70 1 OS=Pichia angusta GN=HSA1 ... [more]
HSP71_DROSI2.802e-1442.17Major heat shock 70 kDa protein Ab OS=Drosophila s... [more]
HSP74_ANOAL6.241e-1437.35Heat shock protein 70 B2 OS=Anopheles albimanus GN... [more]
HSP76_PIG1.390e-1336.59Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6... [more]
HSP72_ANOAL1.390e-1336.14Heat shock protein 70 A2 OS=Anopheles albimanus GN... [more]
HSP71_ANOAL1.390e-1336.14Heat shock protein 70 A1 OS=Anopheles albimanus GN... [more]

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Properties
Property NameValue
Genbank descriptionC06008G09SK RindPdig24 Citrus clementina cDNA clone C06008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298120 ID=CX298120; Name=CX298120; organism=Citrus clementina; type=EST; length=607bp
CGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGAAAACTATG
CCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCTCCAAACTT
GATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAGGCAATTCA
ATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGAAGACAAGA
TGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGATGTATCAA
GGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATGCTCCTCCAGC
TGGTGGCAGTGCCGCCGGTCCCAAGATTGAGGAAGTTGACTAAGCTTCCA
GTTTTATTTTGTTGTGTTTGTGGGAGGTCGGTTTTTTGACGGTGGGAAAA
CTGGACGTTTGGTTTTTATCTTATGTTGTTTTAGCCTTAGGATGAATATT
AATTTTTCCTTTTCTTTTTATTTTTCAAATTTTACTTTTAATTCGGACCA
ATTTATATAATGAATATTTTTCGGTCCCTAAATATTGTCTCTTTTGCTTG
AAGCCTTATTAATTATGAACAAAAGTCATGCCACCCCATGAACGTTTGTG
GCCCAAA
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