CX298120

Overview
NameCX298120
Unique NameCX298120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFO (78 kDa glucose-regulated protein homolog OS=Plasmodium falciparum (isolate NF54) PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 34/80 (42.50%), Postives = 56/80 (70.00%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            ++KVEAKN L+NY  +M+ TV+D +K+  K++  DK  I  A+  A  WL++N  A+++  + K+K+LE++C PII K+Y
Sbjct:  555 REKVEAKNKLDNYIQSMKATVEDKDKLADKIEKEDKNTILSAVKDAEDWLNNNSNADSEALKQKLKDLEAVCQPIIVKLY 634          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFA (78 kDa glucose-regulated protein homolog (Fragment) OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 34/80 (42.50%), Postives = 56/80 (70.00%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            ++KVEAKN L+NY  +M+ TV+D +K+  K++  DK  I  A+  A  WL++N  A+++  + K+K+LE++C PII K+Y
Sbjct:  179 REKVEAKNNLDNYIQSMKATVEDKDKLADKIEKEDKNTILSAVKDAEDWLNNNSNADSEALKQKLKDLEAVCQPIIVKLY 258          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP76_SAGOE (Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 28/82 (34.15%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            E  + +V AKN+LE + ++++ ++++E +  K+   D+ K++D   + + WL+ NQLA+ +E+E + +ELE IC PI +++Y
Sbjct:  532 EAQRDRVAAKNSLETHVFHVKGSLQEESLRDKIPKEDRHKVQDKCQEVLAWLEHNQLADKEEYEHQKRELEQICRPIFSRLY 613          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 29/82 (35.37%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            E  + +V AKN+LE + ++++ ++++E +  K+   D++K++D   + + WL+ NQLAE +E+E + +ELE IC PI +++Y
Sbjct:  532 EAQRDRVAAKNSLEAHVFHVKGSLQEESLRDKIPEEDRRKMQDKCREVLAWLEHNQLAEKEEYEHQKRELEQICRPIFSRLY 613          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP68_DROME (Heat shock protein 68 OS=Drosophila melanogaster GN=Hsp68 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E H++++ A+N LE Y + ++     E  G ++  ADK  I +   +A++WLDSN  AE +E+E K+KELE  C+PI+ KM++
Sbjct:  528 ERHRQRIAARNQLETYLFGVKEAA--ENGGDRISAADKSSIVERCSEAMKWLDSNTTAEKEEYEYKLKELEQFCSPIMTKMHK 608          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP72_PICAN (Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 31/82 (37.80%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            E+  K++ AKN LE+YAY+++ T  +++   K++ + ++    A D  I WLD NQ A A+E++DK KELE   N ++  +Y
Sbjct:  528 EKEAKRIAAKNGLESYAYSLKQTTSEKQFEEKVEASKREAFTKACDDTIAWLDENQTATAEEYDDKRKELEQAGNEVLKDLY 609          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_SCHPO (78 kDa glucose-regulated protein homolog OS=Schizosaccharomyces pombe GN=bip1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 32/81 (39.51%), Postives = 58/81 (71.60%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLD-SNQLAEADEFEDKMKELESICNPIIAKMY 247
            K+++EA+N LENYAY+++    D E++G K+DP DK+ + DA++   +WL+   + A  +EFED+ ++L+++ +PI  K+Y
Sbjct:  561 KERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP70_SCHMA (Heat shock 70 kDa protein homolog OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.013e-13
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+ + +V AKN+LE+Y Y M+  V+ E +  K+  +D++ I    +  I WLD +Q AE  E+E K +ELE +C PII K+YQ
Sbjct:  528 EKQRDRVSAKNSLESYVYTMKQQVEGE-LKEKIPESDRQVIISKCEDTISWLDVHQSAEKHEYESKREELEKVCAPIITKVYQ 609          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_YARLI (78 kDa glucose-regulated protein homolog OS=Yarrowia lipolytica GN=KAR2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.537e-12
Identity = 32/82 (39.02%), Postives = 59/82 (71.95%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKDEK-IGSKLDPADKKKIEDAIDQAIQWLDSNQL-AEADEFEDKMKELESICNPIIAKMYQ 250
            ++ +EAKN+LENYA+++RN V D+  +G K+   DK+ + DA+ + ++WL++N + A  ++FE+K + L +I  PI +K+Y+
Sbjct:  563 RETIEAKNSLENYAHSLRNQVADKSGLGGKISADDKEALNDAVTETLEWLEANSVSATKEDFEEKKEALSAIAYPITSKIYE 644          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 32/81 (39.51%), Postives = 58/81 (71.60%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKDEK-IGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 247
            ++++EA+N LENYA++++N V DE  +G K+D  DK+ I DA+ +A  WL+ N   A A++F+++ ++L ++  PI +K+Y
Sbjct:  565 RERIEARNGLENYAFSLKNQVNDEDGLGGKIDEEDKETILDAVKEAQDWLEENAATASAEDFDEQKEKLSNVAYPITSKLY 645          
The following BLAST results are available for this feature:
BLAST of CX298120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
GRP78_PLAFO1.390e-1342.5078 kDa glucose-regulated protein homolog OS=Plasmo... [more]
GRP78_PLAFA1.816e-1342.5078 kDa glucose-regulated protein homolog (Fragment... [more]
HSP76_SAGOE2.372e-1334.15Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN... [more]
HSP76_HUMAN2.372e-1335.37Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP... [more]
HSP68_DROME2.372e-1339.76Heat shock protein 68 OS=Drosophila melanogaster G... [more]
HSP72_PICAN6.901e-1337.80Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 ... [more]
GRP78_SCHPO6.901e-1339.5178 kDa glucose-regulated protein homolog OS=Schizo... [more]
HSP70_SCHMA9.013e-1342.17Heat shock 70 kDa protein homolog OS=Schistosoma m... [more]
GRP78_YARLI1.537e-1239.0278 kDa glucose-regulated protein homolog OS=Yarrow... [more]
GRP78_NEUCR2.008e-1239.5178 kDa glucose-regulated protein homolog OS=Neuros... [more]

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Properties
Property NameValue
Genbank descriptionC06008G09SK RindPdig24 Citrus clementina cDNA clone C06008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298120 ID=CX298120; Name=CX298120; organism=Citrus clementina; type=EST; length=607bp
CGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGAAAACTATG
CCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCTCCAAACTT
GATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAGGCAATTCA
ATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGAAGACAAGA
TGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGATGTATCAA
GGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATGCTCCTCCAGC
TGGTGGCAGTGCCGCCGGTCCCAAGATTGAGGAAGTTGACTAAGCTTCCA
GTTTTATTTTGTTGTGTTTGTGGGAGGTCGGTTTTTTGACGGTGGGAAAA
CTGGACGTTTGGTTTTTATCTTATGTTGTTTTAGCCTTAGGATGAATATT
AATTTTTCCTTTTCTTTTTATTTTTCAAATTTTACTTTTAATTCGGACCA
ATTTATATAATGAATATTTTTCGGTCCCTAAATATTGTCTCTTTTGCTTG
AAGCCTTATTAATTATGAACAAAAGTCATGCCACCCCATGAACGTTTGTG
GCCCAAA
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