CX298120

Overview
NameCX298120
Unique NameCX298120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_PICAN (78 kDa glucose-regulated protein homolog OS=Pichia angusta GN=BiP PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 34/84 (40.48%), Postives = 61/84 (72.62%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEK-IGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 247
            +E ++KVE++NALENYA++++N   DE   G+KL+  DK+ + DAI++A+++L+ N   A  DEF+++ ++L  +  PI +K+Y
Sbjct:  563 KELREKVESRNALENYAHSLKNQANDENGFGAKLEEDDKETLLDAINEALEFLEDNFDTATKDEFDEQKEKLSKVAYPITSKLY 646          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_ASPNG (78 kDa glucose-regulated protein homolog OS=Aspergillus niger GN=bipA PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 32/81 (39.51%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKDEK-IGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 247
            K K+EA+N LENYA++++N V DE  +G ++D  DK+ I DA+ +  +WL+ N   A  ++FE++ ++L ++  PI +K+Y
Sbjct:  575 KAKIEARNTLENYAFSLKNQVNDENGLGGQIDEDDKQTILDAVKEVTEWLEDNAATATTEDFEEQKEQLSNVAYPITSKLY 655          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_ASPKA (78 kDa glucose-regulated protein homolog OS=Aspergillus kawachi GN=bipA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 32/81 (39.51%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKDEK-IGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 247
            K K+EA+N LENYA++++N V DE  +G ++D  DK+ I DA+ +  +WL+ N   A  ++FE++ ++L ++  PI +K+Y
Sbjct:  575 KAKIEARNTLENYAFSLKNQVNDENGLGGQIDEDDKQTILDAVKEVTEWLEDNAATATTEDFEEQKEQLSNVAYPITSKLY 655          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_ASPAW (78 kDa glucose-regulated protein homolog OS=Aspergillus awamori GN=bipA PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 32/81 (39.51%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKDEK-IGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 247
            K K+EA+N LENYA++++N V DE  +G ++D  DK+ I DA+ +  +WL+ N   A  ++FE++ ++L ++  PI +K+Y
Sbjct:  575 KAKIEARNTLENYAFSLKNQVNDENGLGGQIDEDDKQTILDAVKEVTEWLEDNAATATTEDFEEQKEQLSNVAYPITSKLY 655          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP73_PLAFA (Heat shock 70 kDa protein PPF203 (Fragment) OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 28/71 (39.44%), Postives = 48/71 (67.61%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELE 214
            E++K ++EA+N LENY YN++NT++DE + +K+   D +K    +   + WL+ NQ AE +E+ +K K+ E
Sbjct:  130 EQNKNRIEARNNLENYCYNVKNTLQDENLKTKIPKDDSEKCMKTVKSVLDWLEKNQTAETEEYNEKEKDTE 200          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_DEBHA (78 kDa glucose-regulated protein homolog OS=Debaryomyces hansenii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 33/85 (38.82%), Postives = 61/85 (71.76%), Query Frame = 2
Query:    5 EHKKKVEAKNALENYAYNMRNTVKDEK---IGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 247
            E K K+E++N+LENYA+ ++  VKDE    +GSKL+  DK+ ++DAI + +++++ N   A ++EFE++ ++L  + +PI +K+Y
Sbjct:  573 ELKAKIESRNSLENYAHMLKGQVKDESENGLGSKLNDDDKETLDDAIKETLEFIEDNYDSATSEEFEEQKQKLIDVASPITSKLY 657          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: GRP78_YEAST (78 kDa glucose-regulated protein homolog OS=Saccharomyces cerevisiae GN=KAR2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 32/80 (40.00%), Postives = 55/80 (68.75%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSN-QLAEADEFEDKMKELESICNPIIAKMY 247
            K KVE++N LENYA++++N V  + +G KL+  DK+ + DA +  ++WLD N + A A++F++K + L  +  PI +K+Y
Sbjct:  576 KAKVESRNKLENYAHSLKNQVNGD-LGEKLEEEDKETLLDAANDVLEWLDDNFETAIAEDFDEKFESLSKVAYPITSKLY 654          
The following BLAST results are available for this feature:
BLAST of CX298120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
GRP78_PICAN2.622e-1240.4878 kDa glucose-regulated protein homolog OS=Pichia... [more]
GRP78_ASPNG2.622e-1239.5178 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ASPKA2.622e-1239.5178 kDa glucose-regulated protein homolog OS=Asperg... [more]
GRP78_ASPAW2.622e-1239.5178 kDa glucose-regulated protein homolog OS=Asperg... [more]
HSP73_PLAFA4.473e-1239.44Heat shock 70 kDa protein PPF203 (Fragment) OS=Pla... [more]
GRP78_DEBHA9.965e-1238.8278 kDa glucose-regulated protein homolog OS=Debary... [more]
GRP78_YEAST1.301e-1140.0078 kDa glucose-regulated protein homolog OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionC06008G09SK RindPdig24 Citrus clementina cDNA clone C06008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298120 ID=CX298120; Name=CX298120; organism=Citrus clementina; type=EST; length=607bp
CGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGAAAACTATG
CCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCTCCAAACTT
GATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAGGCAATTCA
ATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGAAGACAAGA
TGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGATGTATCAA
GGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATGCTCCTCCAGC
TGGTGGCAGTGCCGCCGGTCCCAAGATTGAGGAAGTTGACTAAGCTTCCA
GTTTTATTTTGTTGTGTTTGTGGGAGGTCGGTTTTTTGACGGTGGGAAAA
CTGGACGTTTGGTTTTTATCTTATGTTGTTTTAGCCTTAGGATGAATATT
AATTTTTCCTTTTCTTTTTATTTTTCAAATTTTACTTTTAATTCGGACCA
ATTTATATAATGAATATTTTTCGGTCCCTAAATATTGTCTCTTTTGCTTG
AAGCCTTATTAATTATGAACAAAAGTCATGCCACCCCATGAACGTTTGTG
GCCCAAA
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